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Nucleic Acids Symposium Series 2005 49(1):53-54; doi:10.1093/nass/49.1.53
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© 2005 Oxford University Press

Modulation of highly ordered structures of human telomeric sequence by cationic copolymers

Naoki Makita1, Arihiro Kano2, Asako Yamayoshi2, Toshihiro Akaike1 and Atsushi Maruyama2,3

1 Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori, Yokohama 226-8501, Japan, 2 Institute for Materials Chemistry and Engineering, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan, 3 CREST, Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan

Human telomeric DNA, d(GGGTTA)n, tends to adopt complex intramolecular G-quadruplex structure in solution. The sequence folds into G-quadruplex with the antiparallel orientation in the presence of sodium ions 1, 2, while antiparallel and parallel conformations were coexisted in solution containing relatively high concentration of potassium ions3. Here, we describe that cationic comb-type copolymer, poly(l-lysine)-graft-dextran (PLL-g-Dex), triggers selective folding of d[GGG(TTAGGG)3] into G-quadruplex with the parallel orientation. The parallel G-quadruplex formed in the presence of the copolymer has the melting temperature > 90 °C, including strong stabilization effect of the copolymer.


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