© 2005 Oxford University Press
Kinetics and thermodynamics of G-quadruplexes
1 Laboratoire de Biophysique, INSERM U565, CNRS UMR5153, Muséum National d'Histoire Naturelle, 43 rue Cuvier, 75005 Paris (France), 2 Department of Medicine, Duke University Medical Center, Durham, North Carolina (USA), 3 Laboratoire de Chimie Physique Biologique, Université de Liège, (Belgium)
The melting of tetramolecular DNA or RNA quadruplexes is kinetically irreversible. However, rather than being a hindrance, this kinetic inertia allows us to study association and dissociation processes independently. General rules have been extended to longer DNA motifs or sequences containing modified bases such as 8-oxo or 7-deaza guanine. Results were compared with the canonical TG4T and TG5T tetramers: we demonstrate huge differences (up to 105-fold) in the association constants of these quadruplexes depending on primary sequence.