Nucleic Acids Symposium Series

Articles

Richard T. Pon and Shuyuan Yu

Tandem oligonucleotide synthesis using linker (First Base^TM) phosphoramidites
Nucleic Acids Symp Ser 2002 2: 1-2; doi:10.1093/nass/2.1.1 [Abstract] [PDF] [Request Permissions]  

Su Jeong Kim, Yoom-Suk Lee, and Byeang Hyean Kim

Design and synthesis of modified nucleic acid systems
Nucleic Acids Symp Ser 2002 2: 3-4; doi:10.1093/nass/2.1.3 [Abstract] [PDF] [Request Permissions]  

Isao Saito

Design of intelligent nucleobases and DNA HOMO mapping
Nucleic Acids Symp Ser 2002 2: 5-6; doi:10.1093/nass/2.1.5 [Abstract] [PDF] [Request Permissions]  

Jean Louis Leroy

Cytidine protonation and base-pair intercalation in nucleic acid structures: The i-motif
Nucleic Acids Symp Ser 2002 2: 7-8; doi:10.1093/nass/2.1.7 [PDF] [Request Permissions]  

Masayuki Takahashi, Katsumi Morimatsu, and Bengt Norden

Structure of DNA-RecA protein complex, intermediate of homologous recombination, determined by polarised-light spectroscopy
Nucleic Acids Symp Ser 2002 2: 9-10; doi:10.1093/nass/2.1.9 [Abstract] [PDF] [Request Permissions]  

Takeshi Wada, Tomomi Shimazaki, Shingo Nakagawa, Takashi Otuki, Shinya Kurata, Tsutomu Suzuki, Kimitsuna Watanabe, and Kazuhiko Saigo

Chemical synthesis of novel taurine-containing uridine derivatives
Nucleic Acids Symp Ser 2002 2: 11-12; doi:10.1093/nass/2.1.11 [Abstract] [PDF] [Request Permissions]  

Hironao Sajiki, Akira Yamada, Kanoko Yasunaga, Takashi Tsunoda, Mumen F. A. Amer, and Kosaku Hirota

A novel C-C bond formation at the 5-position of uridine derivatives
Nucleic Acids Symp Ser 2002 2: 13-14; doi:10.1093/nass/2.1.13 [Abstract] [PDF] [Request Permissions]  

Masakazu Koga, Masao Kanda, Toshiyuki Yamamuro, Koichi Tamai, Toshinori Uchida, Takaaki Suzuki, and Toshiaki Saeki

Synthesis of carbocyclic 5'-Nor uridine and cytidine derivatives
Nucleic Acids Symp Ser 2002 2: 15-16; doi:10.1093/nass/2.1.15 [Abstract] [PDF] [Request Permissions]  

Kazuhiro Haraguchi, Yutaka Kubota, and Hiromichi Tanaka

Ring opening of nucleosidic 1',2'-epoxides with aluminum reagent: A new stereoselective entry to 1'-C-substituted ribonucleosides
Nucleic Acids Symp Ser 2002 2: 17-18; doi:10.1093/nass/2.1.17 [Abstract] [PDF] [Request Permissions]  

Yoshinobu Kinugawa and Etsuko Kawashima

Stereoselective synthesis of [5'-²H₁][5'-¹³C]nucleosides
Nucleic Acids Symp Ser 2002 2: 19-20; doi:10.1093/nass/2.1.19 [Abstract] [PDF] [Request Permissions]  

Magoichi Sako, Isamu Yaekura, and Yoshihiro Deyashiki

Chemo- and regio-selective modifications of nucleic acids by acetaldehyde and crotonaldehyde
Nucleic Acids Symp Ser 2002 2: 21-22; doi:10.1093/nass/2.1.21 [Abstract] [PDF] [Request Permissions]  

Satoshi Shuto, Tetsuya Mochizuki, Hiroshi Abe, Yoshihiko Kondo, and Akira Matsuda

Synthesis and biological activity of adenophostin derivatives as IP₃ receptor ligands
Nucleic Acids Symp Ser 2002 2: 23-24; doi:10.1093/nass/2.1.23 [Abstract] [PDF] [Request Permissions]  

Satoshi Obika, Osamu Nakagawa, Akiko Hiroto, Yoshiyuki Hari, and Takeshi Imanishi

Synthesis and properties of 5'-amino-2',4'-BNA modified oligonucleotides with P3'N5' phosphoramidate linkages
Nucleic Acids Symp Ser 2002 2: 25-26; doi:10.1093/nass/2.1.25 [Abstract] [PDF] [Request Permissions]  

Kohji Seio, Eri Utagawa, and Mitsuo Sekine

A new protecting group for 5'-hydroxyl function of nucleotides in oligonucleotide synthesis without acid treatment utilizing unique properties of tritylthio group
Nucleic Acids Symp Ser 2002 2: 27-28; doi:10.1093/nass/2.1.27 [Abstract] [PDF] [Request Permissions]  

Akihiro Ohkubo, Yusuke Ezawa, Kohji Seio, and Mitsuo Sekine

A new strategy for the synthesis of oligodeoxynucleotides in the phosphoramidite method without base protection via phosphite intermediates
Nucleic Acids Symp Ser 2002 2: 29-30; doi:10.1093/nass/2.1.29 [Abstract] [PDF] [Request Permissions]  

Fumi Nagatsugi, Shigeki Sasaki, Michael M. Seidmen, and Paul S. Miller

Mutagenesis targeted by triple-helix forming oligonucleotides containing a reactive nucleoside analogue
Nucleic Acids Symp Ser 2002 2: 31-32; doi:10.1093/nass/2.1.31 [Abstract] [PDF] [Request Permissions]  

Mio Kubota and Akira Ono

Duplex and triplex formation of oligodeoxyribonucleotides containing nucleobase-intercalater conjugates
Nucleic Acids Symp Ser 2002 2: 33-34; doi:10.1093/nass/2.1.33 [Abstract] [PDF] [Request Permissions]  

Yosuke Taniguchi, Ryo Takahashi, Keiichi Kodama, Yusuke Senko, Minoru Maeda, and Shigeki Sasaki

Selective formation of non-natural type triplexes containing TA interrupting sites with the TFO incorporating W-shape nucleic acid (WNA) analogs
Nucleic Acids Symp Ser 2002 2: 35-36; doi:10.1093/nass/2.1.35 [Abstract] [PDF] [Request Permissions]  

Ichiro Hirao, Michiko Kimoto, Tsuneo Mitsui, Yoko Harada, Tsuyoshi Fujiwara, Akira Sato, and Shigeyuki Yokoyama

An unnatural base pair between imidazolin-2-one and 2-amino-6-(2-thienyl)purine in replication and transcription
Nucleic Acids Symp Ser 2002 2: 37-38; doi:10.1093/nass/2.1.37 [Abstract] [PDF] [Request Permissions]  

Satoshi Kumamoto, Naoko Kawakami, Takashi Fujishima, Takayoshi Ohtsuka, Kazushige Yamana, Hidehiko Nakano, and Yosohiro Sugie

Probing DNA sequences by anthraquinone-modified DNA that is immobilized on gold surface
Nucleic Acids Symp Ser 2002 2: 39-40; doi:10.1093/nass/2.1.39 [Abstract] [PDF] [Request Permissions]  

Satoru Horiya, Xianglan Li, Gota Kawai, Ryota Saito, Akira Katoh, Koh Kobayashi, and Kazuo Harada

RNA LEGO: Magnesium-dependent assembly of RNA building blocks through loop-loop interactions
Nucleic Acids Symp Ser 2002 2: 41-42; doi:10.1093/nass/2.1.41 [Abstract] [PDF] [Request Permissions]  

Hisafumi Ikeda, Madoka Tonosaki, Akinori Sugiyama, Fumio Tashiro, and Yushin Nakamura

Development of novel whole-mount in situ hybridization (WISH)
Nucleic Acids Symp Ser 2002 2: 43-44; doi:10.1093/nass/2.1.43 [Abstract] [PDF] [Request Permissions]  

Yoshihito Ueno, Yoichiro Kato, Shusaku Okatani, and Yukio Kitade

Synthesis of the antisense oligonucleotides carrying the modified 2-5A molecules at their 5'-termini and their properties
Nucleic Acids Symp Ser 2002 2: 45-46; doi:10.1093/nass/2.1.45 [Abstract] [PDF] [Request Permissions]  

Thirumananseri Kumarevel, Zui Fujimoto, Masanao Oda, Satoshi Nishikawa, Hiroshi Mizuno, and Penmetcha K.R. Kumar

Crystallization and preliminary X-ray diffraction studies of HutP protein: An RNA-binding protein that regulates the transcription of hut operon in Bacillus subtilis
Nucleic Acids Symp Ser 2002 2: 47-48; doi:10.1093/nass/2.1.47 [Abstract] [PDF] [Request Permissions]  

Akimasa Matsugami, Kiyoshi Ouhashi, Tetsuro Ikeda, Tomoyuki Okuizumi, Hidetsugu Sotoya, Seiichi Uesugi, and Masato Katahira

Unique quadruplex structures of d(GGA)₄ (12-mer) and d(GGA)₈ (24-mer)—Direct evidence of the formation of non-canonical base pairs and structural comparison—
Nucleic Acids Symp Ser 2002 2: 49-50; doi:10.1093/nass/2.1.49 [Abstract] [PDF] [Request Permissions]  

Tomoko Sunami, Tomonori Kobuna, Jiro Kondo, Ichiro Hirao, Kimitsuna Watanabe, Kin-ichiro Miura, and Akio Takénaka

Crystal structure of d(GCGAAAGCT) containing parallel-stranded duplex with homo base pairs and anti-parallel duplex with Watson-Crick base pairs
Nucleic Acids Symp Ser 2002 2: 51-52; doi:10.1093/nass/2.1.51 [Abstract] [PDF] [Request Permissions]  

Hirofumi Ohishi, Kenji Suzuki, Kazimierz Grzeskowiak, Keiichi Fukuyama, and Toshimasa Ishida

The X-ray crystallographic study of long chain left handed Z-DNA and polyamine complex and structural chemistry study of effection by polyamine for the Z-DNA
Nucleic Acids Symp Ser 2002 2: 53-54; doi:10.1093/nass/2.1.53 [Abstract] [PDF] [Request Permissions]  

Hidetaka Torigoe, Shinobu Sato, Ken-ichi Yamashita, Satoshi Obika, Takeshi Imanishi, and Shigeori Takenaka

Binding of threading intercalator to nucleic acids: Thermodynamic analyses
Nucleic Acids Symp Ser 2002 2: 55-56; doi:10.1093/nass/2.1.55 [Abstract] [PDF] [Request Permissions]  

Lukasz Bielecki, Mariusz Popenda, and Ryszard W. Adamiak

The molecular dynamics thermocycler. A new approach to sample conformational space, as exemplified by the RNA hairpin
Nucleic Acids Symp Ser 2002 2: 57-58; doi:10.1093/nass/2.1.57 [Abstract] [PDF] [Request Permissions]  

Yuichi Sato, Won Jong Kim, Sung Won Choi, Minako Saito, Arihiro Kano, Toshihiro Akaike, and Atsushi Maruyama

Investigation of DNA strand exchange mechanisms mediated by cationic polymers
Nucleic Acids Symp Ser 2002 2: 59-60; doi:10.1093/nass/2.1.59 [Abstract] [PDF] [Request Permissions]  

Jie Liu, Seiji Tani, and Yukio Kubota

Solution structure of the DNA complexes with an alkyl-linked bis(benzimidazole) compound, 1,4-bis[5-(4-methyl-1-piperazinyl)-2-benzimidazolyl]butane
Nucleic Acids Symp Ser 2002 2: 61-62; doi:10.1093/nass/2.1.61 [Abstract] [PDF] [Request Permissions]  

Tatsuo Ohmichi, Hisae Karimata, and Naoki Sugimoto

Effect of secondary structure of short double-stranded RNA on RNAi efficiency
Nucleic Acids Symp Ser 2002 2: 63-64; doi:10.1093/nass/2.1.63 [Abstract] [PDF] [Request Permissions]  

Kazuma Takada, Kyoko Hanawa, Sung Ga Lee, Hyouta Himeno, and Akira Muto

The structure and function of tmRNA
Nucleic Acids Symp Ser 2002 2: 65-66; doi:10.1093/nass/2.1.65 [Abstract] [PDF] [Request Permissions]  

Makoto Nagaoka, Yoshihide Doi, Jun Kuwahara, and Yukio Sugiura

Alpha-helix substitution: Novel approach for the design of a new zinc finger peptides for AT-rich sequence
Nucleic Acids Symp Ser 2002 2: 67-68; doi:10.1093/nass/2.1.67 [Abstract] [PDF] [Request Permissions]  

Fumihiro Fujimori, Fumihiko Kitagawa, Yukiko Abe, Youji Ohori, Rieko Kiyota, Yushin Nakamura, Hisafumi Ikeda, and Yasufumi Murakami

Application of peptide nucleic acid (PNA) for detection of transcription factors binding probes
Nucleic Acids Symp Ser 2002 2: 69-70; doi:10.1093/nass/2.1.69 [Abstract] [PDF] [Request Permissions]  

Shuntaro Takahashi, Hisao Matsuno, Hiroyuki Furusawa, and Yoshio Okahata

Direct monitoring of EcoRII restriction enzyme reactions on a 27MHz quartz-crystal microbalance
Nucleic Acids Symp Ser 2002 2: 71-72; doi:10.1093/nass/2.1.71 [Abstract] [PDF] [Request Permissions]  

Saulius Klimasauskas, Ruta Gerasimaite, Giedrius Vilkaitis, and Saulius Kulakauskas

N4,5-dimethylcytosine, a novel hypermodified base in DNA
Nucleic Acids Symp Ser 2002 2: 73-74; doi:10.1093/nass/2.1.73 [Abstract] [PDF] [Request Permissions]  

Hiroyuki Asanuma, Mingzhe Liu, Daisuke Tamaru, Xingguo Liang, and Makoto Komiyama

Photo-regulation of transcription by RNA polymerase with azobenzene-tethered promoter
Nucleic Acids Symp Ser 2002 2: 75-76; doi:10.1093/nass/2.1.75 [Abstract] [PDF] [Request Permissions]  

Yukihide Tomari, Tsutomu Suzuki, and Takuya Ueda

tRNA Recognition by CCA-adding enzyme
Nucleic Acids Symp Ser 2002 2: 77-78; doi:10.1093/nass/2.1.77 [Abstract] [PDF] [Request Permissions]  

Nobukazu Shimada, Keiko Matsuzaki, Takeo Suzuki, Tsutomu Suzuki, and Kimitsuna Watanabe

Quality control of translation through the kinetic discrimination of tRNAs in the network of aminoacyl-tRNA synthetases
Nucleic Acids Symp Ser 2002 2: 79-80; doi:10.1093/nass/2.1.79 [Abstract] [PDF] [Request Permissions]  

Yoshiyuki Nagaoka, Junji Yokozawa, Takuya Umehara, Jun Iwaki, Koji Okamoto, Yutaka Kawarabayasi, Yoshinori Koyama, Yoshihiko Sako, Takayoshi Wakagi, Atsushi Kuno, and Tsunemi Hasegawa

Molecular recognition of threonine tRNA by threonyl-tRNA synthetase from an extreme thermophilic archaeon, Aeropyrum pernix K1
Nucleic Acids Symp Ser 2002 2: 81-82; doi:10.1093/nass/2.1.81 [Abstract] [PDF] [Request Permissions]  

Masayasu Kuwahara, Tsutomu Ohbayashi, Kazuo Hanawa, Atsushi Shoji, Akiko N. Ozaki, Hiroaki Ozaki, and Hiroaki Sawai

Enzymatic incorporation of chemically-modified nucleotides into DNAs
Nucleic Acids Symp Ser 2002 2: 83-84; doi:10.1093/nass/2.1.83 [Abstract] [PDF] [Request Permissions]  

Hiroyuki Kamiya, Laurence Dugué, Hiroyuki Yakushiji, Sylvie Pochet, Yusaku Nakabeppu, and Hideyoshi Harashima

Substrate recognition by the human MTH1 protein
Nucleic Acids Symp Ser 2002 2: 85-86; doi:10.1093/nass/2.1.85 [Abstract] [PDF] [Request Permissions]  

Chie Otsuka, David Loakes, and Kazuo Negishi

The role of deoxycytidyl transferase activity of yeast Rev1 protein in the bypass of abasic sites
Nucleic Acids Symp Ser 2002 2: 87-88; doi:10.1093/nass/2.1.87 [Abstract] [PDF] [Request Permissions]  

Tomoko Taga, Masami Hino, Katsunori Suzuki, and Kazuo Yoshida

Isolation of temperature sensitive mutants and their mapping in Agrobacterium tumefaciens
Nucleic Acids Symp Ser 2002 2: 89-90; doi:10.1093/nass/2.1.89 [Abstract] [PDF] [Request Permissions]  

J-ney Bautista-Zapanta, Katsunori Suzuki, and Kazuo Yoshida

Characterization of four ribosomal RNA operons in the genome of Agrobacterium tumefaciens MAFF301001
Nucleic Acids Symp Ser 2002 2: 91-92; doi:10.1093/nass/2.1.91 [Abstract] [PDF] [Request Permissions]  

Shinya Saito, Shigeki Miura, Yuichi Yamamoto, Heisaburo Shindo, and Mitsuhiro Shimizu

The role of nucleosome positioning in repression by the yeast 2/Mcm1p repressor
Nucleic Acids Symp Ser 2002 2: 93-94; doi:10.1093/nass/2.1.93 [Abstract] [PDF] [Request Permissions]  

Yusuke Hiraku, Shinji Oikawa, and Shosuke Kawanishi

Distamycin A, a minor groove binder, changes enediyne-induced DNA cleavage sites and enhances apoptosis
Nucleic Acids Symp Ser 2002 2: 95-96; doi:10.1093/nass/2.1.95 [Abstract] [PDF] [Request Permissions]  

Chunyuan Jin, Hongjie Li, Hideyo Ugai, Takehide Murata, and Kazunari K. Yokoyama

Transcriptional regulation of the c-jun gene by AP-1 repressor protein JDP2 during the differentiation of F9 cells
Nucleic Acids Symp Ser 2002 2: 97-98; doi:10.1093/nass/2.1.97 [Abstract] [PDF] [Request Permissions]  

Koji Morita, Koji Yamate, Shin-ichi Kurakata, Koji Abe, Takeshi Imanishi, and Makoto Koizumi

Down-regulation of VEGF mRNA expression by 2'-O,4'-C-ethylene-bridged nucleic acid (ENA) antisense oligonucleotides and investigation of non-target gene expression
Nucleic Acids Symp Ser 2002 2: 99-100; doi:10.1093/nass/2.1.99 [Abstract] [PDF] [Request Permissions]  

Keiko Ninomiya, Takamasa Endo, Toshikazu Minohata, Masahisa Tajiri, Maya Suzuki, Tomoyoshi Kurita, Takahiro Hohsaka, and Masahiko Sisido

Aminoacylation of tRNA by antisense molecule
Nucleic Acids Symp Ser 2002 2: 101-102; doi:10.1093/nass/2.1.101 [Abstract] [PDF] [Request Permissions]  

Yoshiaki Inaki and Hisato Maruoka

Study on the inhibition of protein production by L-cysteine derivatives of nucleic acid bases
Nucleic Acids Symp Ser 2002 2: 103-104; doi:10.1093/nass/2.1.103 [Abstract] [PDF] [Request Permissions]  

Barbara Nawrot, Slawomir Antoszczyk, Maria Maszewska, Grzegorz Rebowski, Tomoko Kuwabara, Masaki Warashina, Kazunari Taira, and Wojciech J. Stec

Modulation of beta-secretase gene expression by action of catalytic nucleic acids
Nucleic Acids Symp Ser 2002 2: 105-106; doi:10.1093/nass/2.1.105 [Abstract] [PDF] [Request Permissions]  

Tetsuji Yamaoka, Tsuyoshi Kimura, Tatsuya Kitagawa, Reiko Iwase, and Akira Murakami

Effect of chemical features and stability of polyplexes on their gene transfer efficiency
Nucleic Acids Symp Ser 2002 2: 107-108; doi:10.1093/nass/2.1.107 [Abstract] [PDF] [Request Permissions]  

Akihiko Narita, Toshikazu Bando, and Hiroshi Sugiyama

Molecular design of hairpin polyamide possessing sequence-specific alkylation activity
Nucleic Acids Symp Ser 2002 2: 109-110; doi:10.1093/nass/2.1.109 [Abstract] [PDF] [Request Permissions]  

Yoshiaki Hori, Elena V. Bichenkova, Amanda N. Wilton, Terumichi Tanaka, Kenneth T. Douglas, and Yo Kikuchi

Porphyrins and porphines inhibit the ribonuclease P reaction in vitro
Nucleic Acids Symp Ser 2002 2: 111-112; doi:10.1093/nass/2.1.111 [Abstract] [PDF] [Request Permissions]  

Makoto Miyagishi and Kazunari Taira

Development and application of siRNA expression vector
Nucleic Acids Symp Ser 2002 2: 113-114; doi:10.1093/nass/2.1.113 [Abstract] [PDF] [Request Permissions]  

Mayu Iyo, Hiroaki Kawasaki, and Kazunari Taira

Construction of an allosteric trans-maxizyme targeting for two distinct oncogenes
Nucleic Acids Symp Ser 2002 2: 115-116; doi:10.1093/nass/2.1.115 [Abstract] [PDF] [Request Permissions]  

Snehlata Tripathi, Krishna Misra, and Yogesh S. Sanghvi

Synthesis and application of bis (tert-butyl)-1-methyl pyrenyl-silyl chloride as a 5'-hydroxyl protecting group for nucleosides and as a fluorescent purification handle in oligonucleotide synthesis
Nucleic Acids Symp Ser 2002 2: 117-118; doi:10.1093/nass/2.1.117 [Abstract] [PDF] [Request Permissions]  

Yoshiya Ikawa, Kentaro Tsuda, Shigeyoshi Matsumura, Shota Atsumi, and Tan Inoue

Modeling of a possible evolutional process from a ribozyme to a catalytic RNP
Nucleic Acids Symp Ser 2002 2: 119-120; doi:10.1093/nass/2.1.119 [Abstract] [PDF] [Request Permissions]  

Shinsuke Sando and Eric T. Kool

Nonenzymatic DNA ligation in Escherichia coli cells
Nucleic Acids Symp Ser 2002 2: 121-122; doi:10.1093/nass/2.1.121 [Abstract] [PDF] [Request Permissions]  

Jacob Samson Barnor, Naoko Miyano-Kurosaki, Kazuya Yamaguchi, Hiroki Kobayashi, Koichi Ishikawa, Mubarak Osei-Kwasi, William Kwabina Ampofo, David Ofori-Adjei, Yoshio Inagaki, Naoki Yamamoto, and Hiroshi Takaku

Down regulation of human immunodeficiency virus type-1 (HIV-1) expression by Vif antisense RNA expression vectors in transfected cells
Nucleic Acids Symp Ser 2002 2: 123-124; doi:10.1093/nass/2.1.123 [Abstract] [PDF] [Request Permissions]  

Takahiko Nojima, Hiroyuki Ueyama, Makoto Takagi, and Shigeori Takenaka

Patassium sensing oligonucleotide, PSO, based on DNA tetraplex formation
Nucleic Acids Symp Ser 2002 2: 125-126; doi:10.1093/nass/2.1.125 [Abstract] [PDF] [Request Permissions]  

Shinya Hagihara, Kazuhiko Nakatani, and Isao Saito

Recognition of DNA mismatch structures
Nucleic Acids Symp Ser 2002 2: 127-128; doi:10.1093/nass/2.1.127 [Abstract] [PDF] [Request Permissions]  

Akinori Kuzuya, Ryo Mizoguchi, Fumi Morisawa, and Makoto Komiyama

Novel approach for SNP genotyping based on site-selective RNA scission
Nucleic Acids Symp Ser 2002 2: 129-130; doi:10.1093/nass/2.1.129 [Abstract] [PDF] [Request Permissions]  

Hiroshi Aoki and Yoshio Umezawa

Ion-channel sensors for electrochemical detection of DNA based on self-assembled PNA monolayers
Nucleic Acids Symp Ser 2002 2: 131-132; doi:10.1093/nass/2.1.131 [Abstract] [PDF] [Request Permissions]  

Kazuhiro Haraguchi, Shingo Takeda, and Hiromichi Tanaka

Reaction of 4',5'-epoxynucleosides with carbon nucleophiles: Stereoselective synthesis of 4'-C-carbon-substituted nucleosides
Nucleic Acids Symp Ser 2002 2: 133-134; doi:10.1093/nass/2.1.133 [Abstract] [PDF] [Request Permissions]  

Katsutoshi Tsuchiya and Hironori Komatsu

Development of new amination reaction at 4-position of pyrimidine nucleosides
Nucleic Acids Symp Ser 2002 2: 135-136; doi:10.1093/nass/2.1.135 [Abstract] [PDF] [Request Permissions]  

Ken-ichi Takatsuki, Shigeo Kohmoto, Keiki Kishikawa, Haruhiro Yamashita, and Makoto Yamamoto

Discovery of a novel route to 2'-deoxy and 2'-functional pyrimidine nucleosides via 3',5'-O-sulfinyl xylo-nucleosides
Nucleic Acids Symp Ser 2002 2: 137-138; doi:10.1093/nass/2.1.137 [Abstract] [PDF] [Request Permissions]  

Toshiyuki Kaneko, Mariko Aso, Morihide Nakamura, Yasuhiro Matsui, Noboru Koga, and Hiroshi Suemune

Synthesis and properties of N-t-butylaminoxyl nucleosides
Nucleic Acids Symp Ser 2002 2: 139-140; doi:10.1093/nass/2.1.139 [Abstract] [PDF] [Request Permissions]  

Hiroharu Kojima, Tsuyoshi Yamaguchi, Atsushi Kozaki, Masayuki Nakanishi, Yoshihito Ueno, and Yukio Kitade

Synthesis of noraristeromycin analogues possessing SAH hydrolase inhibitory activity for the development of antimalaria agents
Nucleic Acids Symp Ser 2002 2: 141-142; doi:10.1093/nass/2.1.141 [Abstract] [PDF] [Request Permissions]  

Fumihiko Kitagawa, Youji Ohori, Hisafumi Ikeda, Humihiro Fujimori, Yasuhumi Murakami, and Yushin Nakamura

Design of a molecular beacon PNA
Nucleic Acids Symp Ser 2002 2: 143-144; doi:10.1093/nass/2.1.143 [Abstract] [PDF] [Request Permissions]  

Toru Sugiyama, Atsushi Kittaka, Yohei Takemoto, Hiroaki Takayama, and Reiko Kuroda

Synthesis of PNA using a Fmoc/Boc protecting group strategy
Nucleic Acids Symp Ser 2002 2: 145-146; doi:10.1093/nass/2.1.145 [Abstract] [PDF] [Request Permissions]  

Yoshiyuki Hari, Tomohisa Osaki, Ken Eguchi, Satoshi Obika, and Takeshi Imanishi

Synthesis and properties of oligonucleotides containing novel 2',4'-BNA analogues (2',4'-BNA^COC)
Nucleic Acids Symp Ser 2002 2: 147-148; doi:10.1093/nass/2.1.147 [Abstract] [PDF] [Request Permissions]  

Md. Monsur Ali, Fumi Nagatsugi, Fumihiko Yamamoto, Minoru Maeda, and Shigeki Sasaki

2-Amino-6-vinyl purine as a tool for post synthetic conjugatjon of DNA with radio-, spin-, fluorescence labels and peptides
Nucleic Acids Symp Ser 2002 2: 149-150; doi:10.1093/nass/2.1.149 [Abstract] [PDF] [Request Permissions]  

Kazuo Kamaike, Takashi Namiki, Yoshihiro Kayama, and Etsuko Kawashima

Novel base-labile protecting groups for 5'-hydroxyl protection in the synthesis of oligonucleotides
Nucleic Acids Symp Ser 2002 2: 151-152; doi:10.1093/nass/2.1.151 [Abstract] [PDF] [Request Permissions]  

Takeshi Wada, Natsuhisa Oka, and Kazuhiko Saigo

Reaction mechanism for the stereoselective internucleotidic bond formation by the oxazaphospholidine approach
Nucleic Acids Symp Ser 2002 2: 153-154; doi:10.1093/nass/2.1.153 [Abstract] [PDF] [Request Permissions]  

Kenzo Fujimoto, Hideaki Yoshino, and Isao Saito

Conformation dependent DNA photoligation via sensitizer tethered 5-carboxyvinyluracil
Nucleic Acids Symp Ser 2002 2: 155-156; doi:10.1093/nass/2.1.155 [Abstract] [PDF] [Request Permissions]  

Satoshi Sakamoto, Takashi Tamura, Takako Furukawa, Yasuo Komatsu, Eiko Ohtsuka, Masaya Kitamura, and Hideo Inoue

RNA cleavage efficiency and catalytic turnover of an oligonucleotide-two copper complexes conjugate
Nucleic Acids Symp Ser 2002 2: 157-158; doi:10.1093/nass/2.1.157 [Abstract] [PDF] [Request Permissions]  

Hirofumi Sato, Yusuke Hashimoto, Mayuko Kikkawa, Takehiko Wada, and Yoshihisa Inoue

DNA recognition control of -PRNA and mismatched base effects upon complex stability
Nucleic Acids Symp Ser 2002 2: 159-160; doi:10.1093/nass/2.1.159 [Abstract] [PDF] [Request Permissions]  

Kenichi Miyata, Akio Kobori, Kohji Seio, and Mitsuo Sekine

Hybridization ability and base pair geometry of modified deoxycytidine derivatives having a 4-N-carbamoyl group
Nucleic Acids Symp Ser 2002 2: 161-162; doi:10.1093/nass/2.1.161 [Abstract] [PDF] [Request Permissions]  

Hidehito Urata, Tetsuya Kumashiro, Toru Otake, Takuya Kawahata, and Masao Akagi

Anti-HIV-1 activity of L-DNA quadruplex
Nucleic Acids Symp Ser 2002 2: 163-164; doi:10.1093/nass/2.1.163 [Abstract] [PDF] [Request Permissions]  

Rie Kawai, Shinya Okino, Masanori Kataoka, Eri Kambe, and Yoshihiro Hayakawa

Utility of Porous Glass® with a new long-chain alkylamine spacer arm as a solid support for synthesis of oligodeoxyribonucleotides via the phosphoramidite method
Nucleic Acids Symp Ser 2002 2: 165-166; doi:10.1093/nass/2.1.165 [Abstract] [PDF] [Request Permissions]  

Kazuhito Tanabe, Takeshi Inasaki, Akimitsu Okamoto, Sei-ichi Nishimoto, and Isao Saito

Control of photo-induced drug release by the use of conformational change of DNA
Nucleic Acids Symp Ser 2002 2: 167-168; doi:10.1093/nass/2.1.167 [Abstract] [PDF] [Request Permissions]  

Yusuke Ohtani, Kazushige Yamana, and Hidehiko Nakano

Molecular sensing by pyrene excimer signal of fluorescent DNA aptamer
Nucleic Acids Symp Ser 2002 2: 169-170; doi:10.1093/nass/2.1.169 [Abstract] [PDF] [Request Permissions]  

Akimitsu Okamoto, Keiichiro Kanatani, and Isao Saito

Development of electrochemically gene-analyzing method using DNA-modified electrodes
Nucleic Acids Symp Ser 2002 2: 171-172; doi:10.1093/nass/2.1.171 [Abstract] [PDF] [Request Permissions]  

Hisashi Ukawa, Kohji Seio, and Mitsuo Sekine

Computational analysis of stacking interactions between 3-nitropyrrole and natural nucleobases
Nucleic Acids Symp Ser 2002 2: 173-174; doi:10.1093/nass/2.1.173 [Abstract] [PDF] [Request Permissions]  

Satoshi Fujii, Noriaki Okimoto, Toshikazu Ebisuzaki, Takahiko Nojima, Makoto Takagi, and Shigeori Takenaka

Molecular dynamics investigation of the double stranded oligonucleotide d(AT)₆d(AT)₆
Nucleic Acids Symp Ser 2002 2: 175-176; doi:10.1093/nass/2.1.175 [Abstract] [PDF] [Request Permissions]  

Hui Liu, Atsushi Kugimiya, Akimasa Matsugami, Masato Katahira, and Seiichi Uesugi

Quadruplex structures of RNA 14-mer, r(GGAGGUUUUGGAGG) and DNA 14-mer, d(GGAGGTTTTGGAGG)
Nucleic Acids Symp Ser 2002 2: 177-178; doi:10.1093/nass/2.1.177 [Abstract] [PDF] [Request Permissions]  

Tomonori Kobuna, Tomoko Sunami, Jiro Kondo, and Akio Takénaka

X-ray structure of d(CGAA), parallel-stranded DNA duplex with homo base pairs
Nucleic Acids Symp Ser 2002 2: 179-180; doi:10.1093/nass/2.1.179 [Abstract] [PDF] [Request Permissions]  

Tomoko Sunami, Jiro Kondo, Masaru Tsunoda, Takeshi Sekiguchi, Ichiro Hirao, Kimitsuna Watanabe, Kin-ichiro Miura, and Akio Takénaka

X-ray structure of d(GCGAAGC); Switching of partner for G:A pair in duplex form
Nucleic Acids Symp Ser 2002 2: 181-182; doi:10.1093/nass/2.1.181 [Abstract] [PDF] [Request Permissions]  

Hidetaka Torigoe, Yoshiyuki Hari, Satoshi Obika, and Takeshi Imanishi

Triplex formation involving 2',4'-BNA with isoquinolone base analogue: Efficient and selective recognition of C:G interruption
Nucleic Acids Symp Ser 2002 2: 183-184; doi:10.1093/nass/2.1.183 [Abstract] [PDF] [Request Permissions]  

Akio Kobori, Hiroyuki Kumasawa, Kazuhiko Nakatani, and Isao Saito

Binding analysis between naphthyridine dimers and GG mismatch DNA
Nucleic Acids Symp Ser 2002 2: 185-186; doi:10.1093/nass/2.1.185 [Abstract] [PDF] [Request Permissions]  

Yoshiyuki Tanaka, Atsushi Toyozawa, and Yoshinori Kondo

Physicochemical analysis of nucleobase-metal interactions
Nucleic Acids Symp Ser 2002 2: 187-188; doi:10.1093/nass/2.1.187 [Abstract] [PDF] [Request Permissions]  

Takayuki Kanzaki, Shu-ichi Nakano, and Naoki Sugimoto

Role of 2'-OH on thermodynamic stability and structure of chimeric oligonucleotides
Nucleic Acids Symp Ser 2002 2: 189-190; doi:10.1093/nass/2.1.189 [Abstract] [PDF] [Request Permissions]  

Shun-ichi Kawahara, Mitsuo Sekine, Kazunari Taira, Hideyuki Kobayashi, and Tadafumi Uchimaru

Theoretical study of substitution effect of the hydrogen bond stability of 9-methylguanine derivatives and 1-methylcytosine
Nucleic Acids Symp Ser 2002 2: 191-192; doi:10.1093/nass/2.1.191 [Abstract] [PDF] [Request Permissions]  

Yukio Kubota, Seiji Tani, and Junichi Nakamura

The interaction of 2-phenylbenzimidazole compounds with DNA: The influence of terminal substituents
Nucleic Acids Symp Ser 2002 2: 193-194; doi:10.1093/nass/2.1.193 [Abstract] [PDF] [Request Permissions]  

Mayumi Yamanaka and Makoto Chikira

Interaction of several Ni(III) complexes of peptides with DNA; Analysis by DNA-fiber EPR
Nucleic Acids Symp Ser 2002 2: 195-196; doi:10.1093/nass/2.1.195 [Abstract] [PDF] [Request Permissions]  

Satoshi Fujii

RNA motif database catalogued by kink parameters
Nucleic Acids Symp Ser 2002 2: 197-198; doi:10.1093/nass/2.1.197 [Abstract] [PDF] [Request Permissions]  

Takanori Yasukochi, Kazuo Ozawa, Masaaki Sato, Akito Tsutsumi, Takayuki Sumida, and Yasuhiko Shibanaka

Evaluation of the improvement of IGCR technique
Nucleic Acids Symp Ser 2002 2: 199-200; doi:10.1093/nass/2.1.199 [Abstract] [PDF] [Request Permissions]  

Takahiro Hohsaka, Masaharu Fukushima, and Masahiko Sisido

Nonnatural mutagenesis in E. coli and rabbit reticulocyte lysates by using four-base codons
Nucleic Acids Symp Ser 2002 2: 201-202; doi:10.1093/nass/2.1.201 [Abstract] [PDF] [Request Permissions]  

Masumi Taki, Takahiro Hohsaka, Hiroshi Murakami, Atsushi Kuno, Tsunemi Hasegawa, Kazunari Taira, and Masahiko Sisido

A novel fluorescent nonnatural amino acid that can be incorporated into a specific position of streptavidin
Nucleic Acids Symp Ser 2002 2: 203-204; doi:10.1093/nass/2.1.203 [Abstract] [PDF] [Request Permissions]  

Shin-ichi Sato, Hirokazu Honjyo, Shinji Tsuji, Masaki Hagihara, Keisuke Makino, and Takashi Morii

A new strategy to determine the target DNA sequence of a short peptide
Nucleic Acids Symp Ser 2002 2: 205-206; doi:10.1093/nass/2.1.205 [Abstract] [PDF] [Request Permissions]  

Akiko Murakawa, Shinobu Fukusho, Hiroyuki Furusawa, and Yoshio Okahata

In vitro selection of N peptide-binding RNA on a quartz-crystal microbalance
Nucleic Acids Symp Ser 2002 2: 207-208; doi:10.1093/nass/2.1.207 [Abstract] [PDF] [Request Permissions]  

Shotaro Kishikawa, Hideyo Ugai, Takehide Murata, and Kazunari K. Yokoyama

Roles of histone acetylation in the Dnmtl gene expression
Nucleic Acids Symp Ser 2002 2: 209-210; doi:10.1093/nass/2.1.209 [Abstract] [PDF] [Request Permissions]  

Chihiro Uematsu, Ikuko Makino, and Kazunori Okano

Real-time detection of PCR products for comparative analysis of expressed genes using module-shuffling TaqMan Probes (MTPs)
Nucleic Acids Symp Ser 2002 2: 211-212; doi:10.1093/nass/2.1.211 [Abstract] [PDF] [Request Permissions]  

Shinobu Sato, Takahiko Nojima, Makoto Takagi, Hiroki Kondo, and Shigeori Takenaka

Synthesis of adamantyl naphthalene diimide and its interaction with double stranded DNA
Nucleic Acids Symp Ser 2002 2: 213-214; doi:10.1093/nass/2.1.213 [Abstract] [PDF] [Request Permissions]  

Hiroshi Saitoh, Akiko Nakamura, Masayasu Kuwahara, Hiroaki Ozaki, and Hiroaki Sawai

Modified DNA aptamers against sweet agent aspartame
Nucleic Acids Symp Ser 2002 2: 215-216; doi:10.1093/nass/2.1.215 [Abstract] [PDF] [Request Permissions]  

Shingo Hokabe, Theodor D. Gurkov, Hiroshi Okawara, Kuniaki Nagayama, Shinsei Minoshima, Nobuyoshi Shimizu, and Mikio Kato

Chemical probing and electron microscopic analysis of alternative DNA structure formed in an inverted repeat sequence
Nucleic Acids Symp Ser 2002 2: 217-218; doi:10.1093/nass/2.1.217 [PDF] [Request Permissions]  

Tsuneo Mitsui, Michiko Kimoto, Yoko Harada, Akira Sato, Aya Kitamura, Taiko To, Ichiro Hirao, and Shigeyuki Yokoyama

Enzymatic incorporation of an unnatural base pair between 4-propynyl-pyrrole-2-carbaldehyde and 9-methyl-imidazo[(4,5)-b]pyridine into nucleic acids
Nucleic Acids Symp Ser 2002 2: 219-220; doi:10.1093/nass/2.1.219 [Abstract] [PDF] [Request Permissions]  

Hiroshi Jinmei, Hazuki Takahashi, Rie Amano, Kaori Suzuki, Mineo Saneyoshi, and Toyofumi Yamaguchi

Telomerase-inhibitory effects of sugar-modified nucleotide analogs
Nucleic Acids Symp Ser 2002 2: 221-222; doi:10.1093/nass/2.1.221 [Abstract] [PDF]