Nucleic Acids Symposium Series

Articles

Gerd K. Wagner, Andrew M. Riley, Heidi J. Rosenberg, Colin W. Taylor, Andreas H. Guse, and Barry V. L. Potter

Analogues of cyclic adenosine 5'-diphosphate ribose and adenophostin A, nucleotides in cellular signal transduction
Nucleic Acids Symp Ser 2003 3: 1-2; doi:10.1093/nass/3.1.1 [Abstract] [PDF] [Request Permissions]  

Kenneth A. Jacobson

Molecular recognition in P2 nucleotide receptors
Nucleic Acids Symp Ser 2003 3: 3-4; doi:10.1093/nass/3.1.3 [PDF] [Request Permissions]  

Yukio Kitade, Hiroharu Kojima, Fazila Zulfiqur, Saori Yabe, Daisuke Yamagiwa, Yasutomo Ito, Masayuki Nakanishi, Yoshihito Ueno, Hye-Sook Kim, and Yusuke Wataya

Synthesis of carbocyclic and acyclic nucleosides possessing 2-fluoroadenine derivatives and their inhibitory activities against Plasmodium falciparum SAH hydrolase
Nucleic Acids Symp Ser 2003 3: 5-6; doi:10.1093/nass/3.1.5 [Abstract] [PDF] [Request Permissions]  

Kazuhiro Haraguchi, Noriaki Shiina, Yuichi Yoshimura, Hisashi Shimada, Kyoko Hashimoto, and Hiromichi Tanaka

Stereoselective synthesis of 2'-ß-carbon-substituted 2'-deoxy-4'-thioribonucleosides from 4-thiofuranoid glycal
Nucleic Acids Symp Ser 2003 3: 7-8; doi:10.1093/nass/3.1.7 [Abstract] [PDF] [Request Permissions]  

Mariko Aso, Toshiyuki Kaneko, Morihide Nakamura, Yasuhiro Matsui, Noboru Koga, and Hiroshi Suemune

Synthetic studies and properties of N-tert-butylaminoxyl nucleosides
Nucleic Acids Symp Ser 2003 3: 9-10; doi:10.1093/nass/3.1.9 [Abstract] [PDF] [Request Permissions]  

G. Framski, A. Manikowski, T. Zandecki, and J. Boryski

Reaction of nucleosides with 2-acetoxyethyl acetoxymethyl ether
Nucleic Acids Symp Ser 2003 3: 11-12; doi:10.1093/nass/3.1.11 [Abstract] [PDF] [Request Permissions]  

Hiroki Kumamoto, Sayoko Onuma, Hiromichi Tanaka, and Yukio Kitade

Stereo-defined synthesis of 5'-(Z)-substituted 4',5'-unsaturated adenosines and evaluation of their inhibitory activity against S-adenosyl homocysteine hydrolase
Nucleic Acids Symp Ser 2003 3: 13-14; doi:10.1093/nass/3.1.13 [Abstract] [PDF] [Request Permissions]  

Jeong A. Lee, Byul Nae Yoo, Won Jun Choi, Hyung Ryong Moon, and Lak Shin Jeong

Synthesis of apio analogues of neplanocin A as potential inhibitors of S-adenosylhomocysteine hydrolase
Nucleic Acids Symp Ser 2003 3: 15-16; doi:10.1093/nass/3.1.15 [Abstract] [PDF] [Request Permissions]  

Yuichi Yoshimura, Hiroki Kumamoto, Ayuka Baba, Shingo Takeda, and Hiromichi Tanaka

Study on the reaction mechanism of C-6 lithiation of pyrimidine nucleosides by using lithium hexamethyldisilazide as a base
Nucleic Acids Symp Ser 2003 3: 17-18; doi:10.1093/nass/3.1.17 [Abstract] [PDF] [Request Permissions]  

Moon Woo Chun, Moo Hong Lim, Hyung Ryong Moon, Hea Ok Kim, Kenneth A. Jacobson, and Lak Shin Jeong

Synthesis of 3'-fluoro analogue of Cl-IB-MECA as adenosine A₃ receptor ligand
Nucleic Acids Symp Ser 2003 3: 19-20; doi:10.1093/nass/3.1.19 [Abstract] [PDF] [Request Permissions]  

Hideyuki Sugimura

Synthetic study of cytosaminomycins using the intramolecular glycosylation as a key step
Nucleic Acids Symp Ser 2003 3: 21-22; doi:10.1093/nass/3.1.21 [Abstract] [PDF] [Request Permissions]  

Takeji Takamura-Enya, Satoko Ishikawa, Masataka Mochizuki, and Keiji Wakabayashi

Development for an efficient synthesis method of 2'-deoxyguanosine-C8 adducts with several amino/nitro-arenes
Nucleic Acids Symp Ser 2003 3: 23-24; doi:10.1093/nass/3.1.23 [Abstract] [PDF] [Request Permissions]  

Tokumi Maruyama, Shigetada Kozai, Tomomi Shimizu, Toshiyuki Kimura, Kazuhito Watanabe, and lkuo Yamamoto

Synthesis and hypnotic-sedative activities of N-substituted uracil on mice
Nucleic Acids Symp Ser 2003 3: 25-26; doi:10.1093/nass/3.1.25 [Abstract] [PDF] [Request Permissions]  

Sun Min Park, Young Ji Yun, and Byeang Hyean Kim

Thymidine-based gelators: design, synthesis, and evaluation
Nucleic Acids Symp Ser 2003 3: 27-28; doi:10.1093/nass/3.1.27 [Abstract] [PDF] [Request Permissions]  

Yusuke Ohba, Kazuo Kamaike, Yusuke Terui, Tairo Oshima, and Etsuko Kawashima

Design, synthesis and analysis of antiviral nucleosides bearing pyrrolepolyamide binding to nucleic acid (II): N²-pyrrolepolyamidopropylguanosine
Nucleic Acids Symp Ser 2003 3: 29-30; doi:10.1093/nass/3.1.29 [Abstract] [PDF] [Request Permissions]  

Su Jeong Kim, Eun-Kyoung Banga, and Byeang Hyean Kim

Syntheses and structural studies of calix[4]arene–nucleoside and calix[4]arene–oligonucleotide hybrids
Nucleic Acids Symp Ser 2003 3: 31-32; doi:10.1093/nass/3.1.31 [Abstract] [PDF] [Request Permissions]  

Takanori Miyashita, Shinji Sakata, and Hiroyuki Hayakawa

First synthesis of L-enantio-uracil dinucleotide
Nucleic Acids Symp Ser 2003 3: 33-34; doi:10.1093/nass/3.1.33 [Abstract] [PDF] [Request Permissions]  

Sadao Hikishima, Yuki Fujisawa, Maki Ogawa, Noriaki Minakawa, and Akira Matsuda

Synthesis and properties of oligodeoxyribonucleotides containing the new base pairs, Im-N^O:Na-O^N and Im-O^N:Na-N^O, with the ability to form four hydrogen bonds
Nucleic Acids Symp Ser 2003 3: 35-36; doi:10.1093/nass/3.1.35 [Abstract] [PDF] [Request Permissions]  

Masayasu Kuwahara, Shin-ichi Hososhima, Yumi Takahata, Rina Kitagata, Atsushi Shoji, Kazuo Hanawa, Akiko N. Ozaki, Hiroaki Ozaki, and Hiroaki Sawai

Simultaneous incorporation of three different modified nucleotides during PCR
Nucleic Acids Symp Ser 2003 3: 37-38; doi:10.1093/nass/3.1.37 [Abstract] [PDF] [Request Permissions]  

Kazuo Tanaka, Ken-ichiro Nishiza, Akimitsu Okamoto, and Isao Saito

Enzymatic ligation and extension of DNA wire
Nucleic Acids Symp Ser 2003 3: 39-40; doi:10.1093/nass/3.1.39 [Abstract] [PDF] [Request Permissions]  

Hidehito Urata, Makiko Go, Hisafumi Hara, and Masao Akagi

Structure and physicochemical properties of diastereomeric isomers of ApA
Nucleic Acids Symp Ser 2003 3: 41-42; doi:10.1093/nass/3.1.41 [Abstract] [PDF] [Request Permissions]  

Kosuke Mukumoto, Takahiko Nojima, Nobuaki Furuno, and Shigeori Takenaka

Development of a novel genosensor based on ferrocenyl oligonucleotides
Nucleic Acids Symp Ser 2003 3: 43-44; doi:10.1093/nass/3.1.43 [Abstract] [PDF] [Request Permissions]  

Yoshiyuki Tanaka, Yasuhiro Kasai, Eugene H. Morita, Chojiro Kojima, Atsushi Toyozawa, Kazuhiko Yamasaki, Kazunari Taira, and Yoshinori Kondo

NMR spectroscopic investigations of the roles of the metal ion at A9/G10.1 site in hammerhead ribozymes
Nucleic Acids Symp Ser 2003 3: 45-46; doi:10.1093/nass/3.1.45 [Abstract] [PDF] [Request Permissions]  

Kuniharu Ijiro, Yasutaka Matsuo, and Masatsugu Shimomura

Stretching of single DNA molecules by LB technique for restriction site mapping
Nucleic Acids Symp Ser 2003 3: 47-48; doi:10.1093/nass/3.1.47 [Abstract] [PDF] [Request Permissions]  

Kohji Seio, Hisashi Ukawa, Koh-ichiro Shohda, and Mitsuo Sekine

Important factors stabilizing stacking interaction between 3-nitropyrrole and natural nucleobases revealed by ab initio calculations
Nucleic Acids Symp Ser 2003 3: 49-50; doi:10.1093/nass/3.1.49 [Abstract] [PDF] [Request Permissions]  

Seiichi Uesugi, Hui Liu, Atsushi Kugimiya, Akimasa Matsugami, and Masato Katahira

RNA and DNA, which contain two GGAGG segments connected with UUUU or TTTT sequences, form entirely different quadruplex structures
Nucleic Acids Symp Ser 2003 3: 51-52; doi:10.1093/nass/3.1.51 [Abstract] [PDF] [Request Permissions]  

Masakazu Koga, Toshiyuki Yamamuro, Koichi Tamai, Masao Kanda, Masahiro Shigeta, Takaaki Suzuki, and Toshiaki Saeki

Synthesis and properties of telomere-mimic carbocyclic 5'-nor 3'-deoxyoligonucleotide
Nucleic Acids Symp Ser 2003 3: 53-54; doi:10.1093/nass/3.1.53 [Abstract] [PDF] [Request Permissions]  

Hironao Sajiki, Fumiyo Aoki, Hiroyoshi Esaki, Tomohiro Maegawa, and Kosaku Hirota

Palladium-catalyzed H-D exchange into nucleic acids in deuterium oxide
Nucleic Acids Symp Ser 2003 3: 55-56; doi:10.1093/nass/3.1.55 [Abstract] [PDF] [Request Permissions]  

Rei Ishikawa, Akira Ono, and Masatsune Kainosho

The NMR studies of substituent effects on the N-H···N hydrogen bond in duplex DNA using 2'-deoxynebularine and ¹⁵N labeled 5-substituted-2'-deoxyuridine base pairs
Nucleic Acids Symp Ser 2003 3: 57-58; doi:10.1093/nass/3.1.57 [Abstract] [PDF] [Request Permissions]  

Hiroaki Ozaki, Kiyohiro Nakajima, Kyoko Yajima, Kaoru Tatsui, Masayasu Kuwahara, and Hiroaki Sawai

Synthesis and properties of oligonucleotides containing C-2 and/or C-5 substituted aarabinofuranosyluracils
Nucleic Acids Symp Ser 2003 3: 59-60; doi:10.1093/nass/3.1.59 [Abstract] [PDF] [Request Permissions]  

Reiko Iwase, Aki Kitani, Tetsuji Yamaoka, and Akira Murakami

Synthesis of antisense oligonucleotides containing photocleavable protecting groups on the thymine bases and their photoinduced duplex formation
Nucleic Acids Symp Ser 2003 3: 61-62; doi:10.1093/nass/3.1.61 [Abstract] [PDF] [Request Permissions]  

Yoshihito Ueno, Shusaku Okatani, Yuuki Yamada, and Yukio Kitade

Synthesis of double-headed 2-5A-antisense chimeras and their ability to activate human RNase L
Nucleic Acids Symp Ser 2003 3: 63-64; doi:10.1093/nass/3.1.63 [Abstract] [PDF] [Request Permissions]  

Takeshi Wada, Yukiko Kato, and Kazuhiko Saigo

Highly chemo- and regioselective phosphitylation of 2'-deoxyribonucleosides
Nucleic Acids Symp Ser 2003 3: 65-66; doi:10.1093/nass/3.1.65 [Abstract] [PDF] [Request Permissions]  

Hirohito Ayame, Takashi Saito, Toshikazu Bando, Noboru Fukuda, and Hiroshi Sugiyama

Fmoc solid-phase synthesis and its application to pyrroleimidazole polyamides
Nucleic Acids Symp Ser 2003 3: 67-68; doi:10.1093/nass/3.1.67 [Abstract] [PDF] [Request Permissions]  

Ryu Tashiro and Hiroshi Sugiyama

Photochemistry of bromouracil containing Z-DNA
Nucleic Acids Symp Ser 2003 3: 69-70; doi:10.1093/nass/3.1.69 [Abstract] [PDF] [Request Permissions]  

Yan Xu and Hiroshi Sugiyama

Photoreactivity of 5-iodouracil-containing telomeric DNA
Nucleic Acids Symp Ser 2003 3: 71-72; doi:10.1093/nass/3.1.71 [Abstract] [PDF] [Request Permissions]  

Atsushi Mahara, Takashi Sakamoto, Tatsuya Munaka, Reiko Iwase, Tetsuji Yamaoka, and Akira Murakami

Detection of acceptor sites for antisense oligonucleotides on native folded RNA by fluorescence-labeled oligonucleotide
Nucleic Acids Symp Ser 2003 3: 73-74; doi:10.1093/nass/3.1.73 [Abstract] [PDF] [Request Permissions]  

Asako Yamayoshi, Kiyoko Kato, Reiko Iwase, Tetsuji Yamaoka, Norio Wake, and Akira Murakami

Photodynamic antisense therapy: regulation of cervical carcinoma cells by psoralen-conjugated oligonucleotides
Nucleic Acids Symp Ser 2003 3: 75-76; doi:10.1093/nass/3.1.75 [Abstract] [PDF] [Request Permissions]  

Mio Kubota, Momo Kosuge, and Akira Ono

Helix formation of oligodeoxyribonucleotides containing base-aromatic ring conjugates
Nucleic Acids Symp Ser 2003 3: 77-78; doi:10.1093/nass/3.1.77 [Abstract] [PDF] [Request Permissions]  

Yuuki Uotani, Shu-ichi Nakano, Shoji Nakashima, Yosuke Anno, Masayuki Fujii, and Naoki Sugimoto

Large stacking stability of a base pair-mimic nucleotide on the DNA duplex
Nucleic Acids Symp Ser 2003 3: 79-80; doi:10.1093/nass/3.1.79 [Abstract] [PDF] [Request Permissions]  

Ken-ichi Haruna, Atsushi Ishii, Kazuhito Tanabe, Wei-Min Dai, Hiroshi Hatta, and Sei-ichi Nishimoto

Photo-induced DNA cleavage reaction characteristics of propargylic sulfones possessing an anthraquinone chromophore
Nucleic Acids Symp Ser 2003 3: 81-82; doi:10.1093/nass/3.1.81 [Abstract] [PDF] [Request Permissions]  

Miho Takagi, Koji Morita, Daisuke Nakai, Rie Nakagomi, Taro Tokui, and Makoto Koizumi

Design and synthesis of oatp subtype-specific antisense oligonucleotides having 2'-O,4'-C-ethylene-bridged nucleic acids (ENA^TM)
Nucleic Acids Symp Ser 2003 3: 83-84; doi:10.1093/nass/3.1.83 [Abstract] [PDF] [Request Permissions]  

Toshihiro Ihara, Takashi Ikegami, Tomohiro Fujii, Yusuke Kitamura, Shinji Sueda, Makoto Takagi, Nicholas E. Geacintov, and Akinori Jyo

Metal ion-directed outside binding of small DNA ligand
Nucleic Acids Symp Ser 2003 3: 85-86; doi:10.1093/nass/3.1.85 [Abstract] [PDF] [Request Permissions]  

Osamu Nakagawa, Akiko Hiroto, Satoshi Obika, and Takeshi Imanishi

A novel nucleic acid analogue, 3'-amino-2'-deoxy-3',4'-BNA, with an N3'P5' phosphoramidate linkage and an S-type conformation
Nucleic Acids Symp Ser 2003 3: 87-88; doi:10.1093/nass/3.1.87 [Abstract] [PDF] [Request Permissions]  

Kazushige Yamana, Naoko Kawakami, Takayoshi Ohtsuka, Yosohiro Sugie, Hidehiko Nakano, and Isao Saito

Electrochemical detection of single-base mismatches in DNA by a redox-active intercalator conjugated oligonucleotide
Nucleic Acids Symp Ser 2003 3: 89-90; doi:10.1093/nass/3.1.89 [Abstract] [PDF] [Request Permissions]  

Tomoya Hirohama and Makoto Chikira

The effect of acridine moiety for binding and reaction of Cu(II)[1,4,7-triazacyclononane] with DNA
Nucleic Acids Symp Ser 2003 3: 91-92; doi:10.1093/nass/3.1.91 [Abstract] [PDF] [Request Permissions]  

Kazuo Kamaike, Kumi Hirose, Yoshihiro Kayama, and Etsuko Kawashima

Synthesis of oligonucleoside phosphorodithioates by the H-phosphonothioate method using bis(2,6-dimethylphenyl)phosphorochloridate as a coupling agent
Nucleic Acids Symp Ser 2003 3: 93-94; doi:10.1093/nass/3.1.93 [Abstract] [PDF] [Request Permissions]  

Yusuke Kitamura, Toshihiro Ihara, Yoshinori Shirasaka, Tomonori Mitsuru, Masato Tazaki, and Akinori Jyo

Highly enhanced duplex stability of dipyrido [3,2-a:2',3'-c] phenazine-modified oligonucleotide conjugate
Nucleic Acids Symp Ser 2003 3: 95-96; doi:10.1093/nass/3.1.95 [Abstract] [PDF] [Request Permissions]  

Lizbeth Hedstrom, Lu Gan, Yollete Guillen Schlippe, Thomas Riera, and Mohammad Seyedsayamdost

IMP dehydrogenase: the dynamics of drug selectivity
Nucleic Acids Symp Ser 2003 3: 97-98; doi:10.1093/nass/3.1.97 [Abstract] [PDF] [Request Permissions]  

Daniel Baranowski, Bozenna Golankiewicz, and Janez Plavec

Conformationally constrained tricyclic nucleosides. Role of electronic and steric factors
Nucleic Acids Symp Ser 2003 3: 99-100; doi:10.1093/nass/3.1.99 [Abstract] [PDF] [Request Permissions]  

Hironori Komatsu, Hirokazu Awano, Hiroki Ishibashi, Toshihiro Oikawa, Ichirou Ikeda, and Tadashi Araki

Chemo-enzymatic syntheses of natural and unnatural 2'-deoxynucleosides
Nucleic Acids Symp Ser 2003 3: 101-102; doi:10.1093/nass/3.1.101 [Abstract] [PDF] [Request Permissions]  

Rie Kawai, Reiko Nagata, Akiyoshi Hirata, and Yoshihiro Hayakawa

A new synthetic approach to cyclic bis(3'5')diguanylic acid
Nucleic Acids Symp Ser 2003 3: 103-104; doi:10.1093/nass/3.1.103 [Abstract] [PDF] [Request Permissions]  

Kazuhisa Okada, Haruhiko Taguchi, Kohji Seio, Hideaki Kakeya, Hiroyuki Osada, Takuma Sasaki, and Mitsuo Sekine

Synthesis and biological properties of stable phosmidosine analogs
Nucleic Acids Symp Ser 2003 3: 105-106; doi:10.1093/nass/3.1.105 [Abstract] [PDF] [Request Permissions]  

Vern L. Schramm

Transition state analogues for enzymes of nucleic acid metabolism
Nucleic Acids Symp Ser 2003 3: 107-108; doi:10.1093/nass/3.1.107 [Abstract] [PDF] [Request Permissions]  

Takeshi Wada, Natsuhisa Oka, and Kazuhiko Saigo

Stereocontrolled synthesis of phosphorothioate DNA by an oxazaphospholidine approach
Nucleic Acids Symp Ser 2003 3: 109-110; doi:10.1093/nass/3.1.109 [Abstract] [PDF] [Request Permissions]  

Mitsuaki Sekiguchi, Tomohisa Osaki, Yasuki Harada, Satoshi Obika, and Takeshi Imanishi

trans-3',4'-BNAs, novel nucleic acid analogues with an S-type conformation: Synthesis and incorporation into oligonucleotides
Nucleic Acids Symp Ser 2003 3: 111-112; doi:10.1093/nass/3.1.111 [Abstract] [PDF] [Request Permissions]  

Yosuke Taniguchi, Yusuke Senko, Keiichi Kodama, Ayako Nakamura, and Shigeki Sasaki

Design and evaluation of novel nucleoside analogs (WNA) for specific formation of non-natural type triplexes containing a TA or CG interrupting site
Nucleic Acids Symp Ser 2003 3: 113-114; doi:10.1093/nass/3.1.113 [Abstract] [PDF] [Request Permissions]  

Muthiah Manoharan

RNA interference and chemically modified siRNAs
Nucleic Acids Symp Ser 2003 3: 115-116; doi:10.1093/nass/3.1.115 [Abstract] [PDF] [Request Permissions]  

Hiroyuki Asanuma, Daijiro Matsunaga, Minghe Liu, Xingguo Liang, Jing Jhao, and Makoto Komiyama

Photo-regulation of DNA function by azobenzene-tethered oligonucleotides
Nucleic Acids Symp Ser 2003 3: 117-118; doi:10.1093/nass/3.1.117 [Abstract] [PDF] [Request Permissions]  

Akihiko Narita, Toshikazu Bando, and Hiroshi Sugiyama

Molecular design of hairpin pyrrole-imidazole polyamides possessing sequence specific DNA alkylating moiety
Nucleic Acids Symp Ser 2003 3: 119-120; doi:10.1093/nass/3.1.119 [Abstract] [PDF] [Request Permissions]  

Kentaro Tanaka, Yasuyuki Yamada, Atsushi Tengeiji, Tatsuhisa Kato, Namiki Toyama, Yusuke Takezawa, Maiko Yori, Motoo Shiro, and Mitsuhiko Shionoya

Artificial metallo-DNA: structural control and discrete metal assembly
Nucleic Acids Symp Ser 2003 3: 121-122; doi:10.1093/nass/3.1.121 [Abstract] [PDF] [Request Permissions]  

Takahiko Nojima, Keiichi Ohtsuka, Toyofumi Nagamatsu, and Shigeori Takenaka

Bis-naphthalene diimide exhibiting an effective bis-threading intercalating ability
Nucleic Acids Symp Ser 2003 3: 123-124; doi:10.1093/nass/3.1.123 [Abstract] [PDF] [Request Permissions]  

Steven A. Benner, Daniel Hutter, and A. Michael Sismour

Synthetic biology with artificially expanded genetic information systems. From personalized medicine to extraterrestrial life
Nucleic Acids Symp Ser 2003 3: 125-126; doi:10.1093/nass/3.1.125 [Abstract] [PDF] [Request Permissions]  

Seiki Baba, Akitsugu Takasu, Kimitsuna Watanabe, and Gota Kawai

Application of the RNA structure classification system, CSNA, to NMR structure determination
Nucleic Acids Symp Ser 2003 3: 127-128; doi:10.1093/nass/3.1.127 [Abstract] [PDF] [Request Permissions]  

Yuichi Sato, Won Jon Kim, Minako Saito, Arihiro Kano, Toshihiro Akaike, and Atsushi Maruyama

Cationic comb-type copolymers as an artificial nucleic acid-chaperone: spectroscopic analyses for DNA copolymer interaction
Nucleic Acids Symp Ser 2003 3: 129-130; doi:10.1093/nass/3.1.129 [Abstract] [PDF] [Request Permissions]  

Akio Kobori, Hitoshi Suda, Kazuhiko Nakatani, and Isao Saito

Detection of the C-C mismatched base pair by small ligands
Nucleic Acids Symp Ser 2003 3: 131-132; doi:10.1093/nass/3.1.131 [Abstract] [PDF] [Request Permissions]  

Yuki Goto, Shinya Hagihara, Akio Kobori, Kazuhiko Nakatani, and Isao Saito

The binding of naphthyridine tetramer to guanine-rich sequences
Nucleic Acids Symp Ser 2003 3: 133-134; doi:10.1093/nass/3.1.133 [Abstract] [PDF] [Request Permissions]  

Masaki Hirose, Satoshi Sakamoto, Yasuo Uekita, Masaya Kitamura, and Hideo Inoue

Oligonucleotide duplex stabilization by end-linked terpyridine·Cu(II) complexes
Nucleic Acids Symp Ser 2003 3: 135-136; doi:10.1093/nass/3.1.135 [Abstract] [PDF] [Request Permissions]  

Hiroyuki Arishima, Masahito Yokoyama, and Makoto Komiyama

Site-selective DNA hydrolysis by the combination of Ce(IV) and oligonucleotide bearing EDTA groups
Nucleic Acids Symp Ser 2003 3: 137-138; doi:10.1093/nass/3.1.137 [Abstract] [PDF] [Request Permissions]  

Hitoshi Suda, Shinya Hagihara, Akio Kobori, Kazuhiko Nakatani, and Isao Saito

2,6-Diaminonaphthyridine derivatives bind to a single nucleotide bulge in DNA
Nucleic Acids Symp Ser 2003 3: 139-140; doi:10.1093/nass/3.1.139 [Abstract] [PDF] [Request Permissions]  

Megumi Sato, Tomohisa Moriguchi, and Kazuo Shinozuka

Synthesis of novel TFOs bearing an abasic portion and their triplex forming ability with a DNA duplex containing a pyrimidine-gapped polypurine strand
Nucleic Acids Symp Ser 2003 3: 141-142; doi:10.1093/nass/3.1.141 [Abstract] [PDF] [Request Permissions]  

Hiromu Kashida, Hiroyuki Asanuma, and Makoto Komiyama

Development of a probe DNA which accompanies color change on hybridization
Nucleic Acids Symp Ser 2003 3: 143-144; doi:10.1093/nass/3.1.143 [Abstract] [PDF] [Request Permissions]  

Masayuki Masuko

Hybridization of an immobilized PNA probe with its complementary oligodeoxyribonucleotide on the surface of silica glass
Nucleic Acids Symp Ser 2003 3: 145-146; doi:10.1093/nass/3.1.145 [Abstract] [PDF] [Request Permissions]  

Itaru Okamoto, Koh-ichiroh Shohda, Kohji Seio, and Mitsuo Sekine

Synthesis and properties of 2'-O-alkylated 2-thiouridine derivatives and oligonucleotides containing 2'-O-alkylated 2-thiouridine derivatives
Nucleic Acids Symp Ser 2003 3: 147-148; doi:10.1093/nass/3.1.147 [Abstract] [PDF] [Request Permissions]  

Morihiro Aoyagi, Masatoshi Ushioda, Kohji Seio, and Mitsuo Sekine

A new 2',3'-cis diol protecting group required for the solid-phase synthesis of capped oligonucleotide derivatives
Nucleic Acids Symp Ser 2003 3: 149-150; doi:10.1093/nass/3.1.149 [Abstract] [PDF] [Request Permissions]  

Shigeori Takenaka, Yutaka Sakakibara, Hiroyuki Ueyama, and Takahiko Nojima

Fluoreometric behavior of a novel bis-acridine orange bound to double stranded DNA
Nucleic Acids Symp Ser 2003 3: 151-152; doi:10.1093/nass/3.1.151 [Abstract] [PDF] [Request Permissions]  

Kazuo Tanaka, Akimitsu Okamoto, and Isao Saito

Development of the drug release system in hole transfer reaction through DNA
Nucleic Acids Symp Ser 2003 3: 153-154; doi:10.1093/nass/3.1.153 [Abstract] [PDF] [Request Permissions]  

Fumi Nagatsugi, Yasushi Suenaga, and Shigeki Sasaki

Efficient cross-linking reactions by functional nucleobases capable of in situ activation under neutral conditions
Nucleic Acids Symp Ser 2003 3: 155-156; doi:10.1093/nass/3.1.155 [Abstract] [PDF] [Request Permissions]  

Hidetaka Torigoe, Kouji Kawahashi, and Yusuke Tamura

Promotion of triplex formation by morpholino modification: thermodynamic and kinetic studies
Nucleic Acids Symp Ser 2003 3: 157-158; doi:10.1093/nass/3.1.157 [Abstract] [PDF] [Request Permissions]  

Hidetaka Torigoe, Takuma Katayama, and Yuuya Umegaki

Thermodynamic analyses of purine motif triplex DNA formation
Nucleic Acids Symp Ser 2003 3: 159-160; doi:10.1093/nass/3.1.159 [Abstract] [PDF] [Request Permissions]  

Keiichiro Kanatani, Yuji Ochi, Akimitsu Okamoto, and Isao Saito

DNA nanomotor using duplex-quadruplex conformational transition
Nucleic Acids Symp Ser 2003 3: 161-162; doi:10.1093/nass/3.1.161 [Abstract] [PDF] [Request Permissions]  

Yukiko Matsuzawa and Akira Hiraishi

Study on DNA precipitation with a cationic polymer PAC (poly aluminuim chloride)
Nucleic Acids Symp Ser 2003 3: 163-164; doi:10.1093/nass/3.1.163 [Abstract] [PDF] [Request Permissions]  

Akio Yamane and Nozomi Nagata

Specificity of one-base mismatch detection with MagiProbe
Nucleic Acids Symp Ser 2003 3: 165-166; doi:10.1093/nass/3.1.165 [Abstract] [PDF] [Request Permissions]  

Akinori Kuzuya, Ryo Mizoguchi, Takuro Sasayama, and Makoto Komiyama

Tandem site-selective RNA scission utilizing acridine-DNA conjugates
Nucleic Acids Symp Ser 2003 3: 167-168; doi:10.1093/nass/3.1.167 [Abstract] [PDF] [Request Permissions]  

Shinobu Sato, Yuki Maeda, Takahiko Nojima, Hiroki Kondo, and Shigeori Takenaka

SNP analysis by using ferrocenyl naphthalene diimide (FND)-based electrochemical hybridization assay (EHA)
Nucleic Acids Symp Ser 2003 3: 169-170; doi:10.1093/nass/3.1.169 [Abstract] [PDF] [Request Permissions]  

Kazuo Tanaka, Akimitsu Okamoto, and Isao Saito

Clear distinction of pyrimidine bases on the complementary strand by fluorescence change of novel fluorescent nucleosides
Nucleic Acids Symp Ser 2003 3: 171-172; doi:10.1093/nass/3.1.171 [Abstract] [PDF] [Request Permissions]  

Mayumi Amano

The new loop-loop interactions between the peripheral domains and three-dimensional model of Tetrahymena group I intron
Nucleic Acids Symp Ser 2003 3: 173-174; doi:10.1093/nass/3.1.173 [Abstract] [PDF] [Request Permissions]  

Jiro Kondo, Shun-ichi Umeda, Kazuhiro Fujita, Tomoko Sunami, and Akio Takénaka

The base-intercalated duplexes of d(GCGAXAGC) with mutation at X (X=G, T or C)
Nucleic Acids Symp Ser 2003 3: 175-176; doi:10.1093/nass/3.1.175 [Abstract] [PDF] [Request Permissions]  

Takanori Kubo, Kengo Takamori, Bakalova Rumiana, Hideki Ohba, and Masayuki Fujii

Conjugate DNAzymes
Nucleic Acids Symp Ser 2003 3: 177-178; doi:10.1093/nass/3.1.177 [Abstract] [PDF] [Request Permissions]  

Takanori Kubo, Bakalova Rumiana, Hideki Ohba, and Masayuki Fujii

Antisense effects of DNA-peptide conjugates
Nucleic Acids Symp Ser 2003 3: 179-180; doi:10.1093/nass/3.1.179 [Abstract] [PDF] [Request Permissions]  

Shigenori Iwai, Aki Inase, Sharif Jafar, Miho Higurashi, Takashi Ohtsuki, Yan Xu, and Hiroshi Sugiyama

Towards artificial repair of UV-damaged DNA: studies on drug binding and alkali hydrolysis
Nucleic Acids Symp Ser 2003 3: 181-182; doi:10.1093/nass/3.1.181 [Abstract] [PDF] [Request Permissions]  

Naoto Kishi, Masayuki Ogino, Isao Saito, Yoshinaga Yoshimura, and Kenzo Fujimoto

Photochemical ligation of DNA "Words" for DNA computing
Nucleic Acids Symp Ser 2003 3: 183-184; doi:10.1093/nass/3.1.183 [Abstract] [PDF] [Request Permissions]  

Sheng Ye, Xingguo Liang, Yoji Yamamoto, Jing-Min Zhou, Takafumi Tomita, Hiroyuki Aburatani, and Makoto Komiyama

Simultaneous detection of multiple single nucleotide polymorphism by single-strand-specific nuclease and PNA probe
Nucleic Acids Symp Ser 2003 3: 185-186; doi:10.1093/nass/3.1.185 [Abstract] [PDF] [Request Permissions]  

Yoshihiro Takeda, Fumitaka Mafuné, and Tamotsu Kondow

Cleavage of stretched DNA on glass by histones observed with fluorescence microscopy
Nucleic Acids Symp Ser 2003 3: 187-188; doi:10.1093/nass/3.1.187 [Abstract] [PDF] [Request Permissions]  

Takako Ohyama, Aya Sasagawa, Norifumi Terui, Hajime Mita, and Yasuhiko Yamamoto

Study on interaction of a cationic porphyrin with DNA
Nucleic Acids Symp Ser 2003 3: 189-190; doi:10.1093/nass/3.1.189 [Abstract] [PDF] [Request Permissions]  

Masumi Taki, Yoshio Kato, Makoto Miyagishi, Yasuomi Takagi, Masayuki Sano, and Kazunari Taira

A Direct and efficient synthesis method for dumbell-shaped linear DNA using PCR in vitro
Nucleic Acids Symp Ser 2003 3: 191-192; doi:10.1093/nass/3.1.191 [Abstract] [PDF] [Request Permissions]  

Masaki Hagihara, Akiyoshi Hirata, Katsutoshi Ohkubo, and Takashi Morii

Design of a ribonucleopeptide biosensor
Nucleic Acids Symp Ser 2003 3: 193-194; doi:10.1093/nass/3.1.193 [Abstract] [PDF] [Request Permissions]  

Satoshi Fujii

Structural characterization of adenine moiety in functional RNA molecules
Nucleic Acids Symp Ser 2003 3: 195-196; doi:10.1093/nass/3.1.195 [Abstract] [PDF] [Request Permissions]  

Yoshiharu Hayashi, Satoshi Takahashi, Katsuyoshi Sakaguchi, Nao Iwata, and Masaki Kobayashi

RNA aptamer evaluation using Comparative Molecular Interaction Profile Analysis system
Nucleic Acids Symp Ser 2003 3: 197-198; doi:10.1093/nass/3.1.197 [Abstract] [PDF] [Request Permissions]  

Thirumananseri Kumarevel, Hiroshi Mizuno, and Penmetcha K.R. Kumar

Allosteric activation of HutP protein, that regulates transcription of hut operon in Bacillus subtilis, mediated by various analogs of histidine
Nucleic Acids Symp Ser 2003 3: 199-200; doi:10.1093/nass/3.1.199 [Abstract] [PDF] [Request Permissions]  

Kazuo Harada, Tetsuya Iwazaki, Xianglan Li, Azusa Yuda, and Koh Kobayashi

The variability of the peptide-binding specificity of RNA
Nucleic Acids Symp Ser 2003 3: 201-202; doi:10.1093/nass/3.1.201 [Abstract] [PDF] [Request Permissions]  

Eugene Hayato Morita, Miki Wakamatsu, Satsuki Kawamoto, Yoshitaka Nishiyama, and Hidenori Hayashi

Studies on the protein-DNA complex formation between the cyanobacterial transcription factors, SmtB and its homologues, functioning as Zinc-ion sensors and the recognition DNA sequences
Nucleic Acids Symp Ser 2003 3: 203-204; doi:10.1093/nass/3.1.203 [Abstract] [PDF] [Request Permissions]  

Kazunori Ikebukuro, Yuji Okumura, Koichi Sumikura, and Isao Karube

Novel strategy for DNA aptamers inhibiting enzymatic activity using algorithm mimicking evolution
Nucleic Acids Symp Ser 2003 3: 205-206; doi:10.1093/nass/3.1.205 [Abstract] [PDF] [Request Permissions]  

Dongru Qiu, Hideyuki Oshima, Yoshiaki Ohashi, and Mitsuhiro Itaya

Construction of physical maps of Bacillus subtilis (natto) strains
Nucleic Acids Symp Ser 2003 3: 207-208; doi:10.1093/nass/3.1.207 [Abstract] [PDF] [Request Permissions]  

Shuichi Hoshika, Naonori Inoue, Noriaki Minakawa, and Akira Matsuda

Investigation of physical and physiological properties of 4'-thioribonucleotide (4'-thioRNA)
Nucleic Acids Symp Ser 2003 3: 209-210; doi:10.1093/nass/3.1.209 [Abstract] [PDF] [Request Permissions]  

Naoki Sugimoto

Beyond the Watson-Crick double helix: design of functional nucleic acids in silico, in tube, and in cell
Nucleic Acids Symp Ser 2003 3: 211-212; doi:10.1093/nass/3.1.211 [Abstract] [PDF] [Request Permissions]  

Takehiko Wada, Hirofumi Sato, and Yoshihisa Inoue

A novel strategy for reversible control of conformation and DNA/RNA recognition of peptide ribonucleic acid (PRNA) by external factors
Nucleic Acids Symp Ser 2003 3: 213-214; doi:10.1093/nass/3.1.213 [Abstract] [PDF] [Request Permissions]  

Ichiro Hirao, Tsuneo Mitsui, Michiko Kimoto, Yoko Harada, and Shigeyuki Yokoyama

An unnatural base pair for efficient incorporation of nucleotide analogs into RNAs
Nucleic Acids Symp Ser 2003 3: 215-216; doi:10.1093/nass/3.1.215 [Abstract] [PDF] [Request Permissions]  

Dipankar Sen and Daniel J.-F. Chinnapen

Deoxyribozymes that catalyze photochemistry: cofactor-dependent and -independent photorepair of thymine dimers
Nucleic Acids Symp Ser 2003 3: 217-218; doi:10.1093/nass/3.1.217 [Abstract] [PDF] [Request Permissions]  

Atsushi Maruyama, Satoru Inoue, Kaori Tajima, Yuichi Sato, Won Jong Kim, and Toshihiro Akaike

Design of artificial nucleic acid chaperones for DNA engineering
Nucleic Acids Symp Ser 2003 3: 219-220; doi:10.1093/nass/3.1.219 [Abstract] [PDF] [Request Permissions]  

Hidetaka Torigoe, Toshihiro Akaike, and Atsushi Maruyama

Rational combination of strategies to achieve synergistic stabilization of triplex
Nucleic Acids Symp Ser 2003 3: 221-222; doi:10.1093/nass/3.1.221 [Abstract] [PDF] [Request Permissions]  

Jiro Kondo, Shun-ichi Umeda, Tomoko Sunami, and Akio Takénaka

The octaplex structure of d(GCGAGAGC) with I-motif of guanine quartet, controlled by potassium concentration
Nucleic Acids Symp Ser 2003 3: 223-224; doi:10.1093/nass/3.1.223 [Abstract] [PDF]