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Contents: No. 50, November 2006   [Index by Author] 

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Thirty-third Symposium on Nucleic Acids Chemistry

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Hiroshi Ohrui, Satoru Kohgo, Hiroyuki Hayakawa, Eiichi Kodama, Masao Matsuoka, Tomohiro Nakata, and Hiroyuki Mitsuya
2'-Deoxy-4'-C-ethynyl-2-fluoroadenosine: A nucleoside reverse transcriptase inhibitor with highly potent activity against all HIV-1 strains, favorable toxic profiles and stability in plasma
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 1-2; doi:10.1093/nass/nrl001 [Abstract] [PDF] [Request Permissions]  

Tetsuya Kodama, Akira Matsuda, and Satoshi Shuto
The first synthesis of 1'-fluoronucleosides
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 3-4; doi:10.1093/nass/nrl002 [Abstract] [PDF] [Request Permissions]  

Hongbin Yan and Eric Humes
Convenient synthesis of 3',5'-cyclic diguanylic acid (cdiGMP)
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 5-6; doi:10.1093/nass/nrl003 [Abstract] [PDF] [Request Permissions]  

Roli Mishra, Satyendra Mishra, Vishnu Diwedi, and Krishna Misra
A strategy for selective N-acylation of purine and pyrimidine bases of deoxy and ribo nucleosides
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 7-8; doi:10.1093/nass/nrl004 [Abstract] [PDF] [Request Permissions]  

Toshihiko Ogata and Takeshi Wada
Chemical synthesis of RNA including 5-taurinomethyluridine
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 9-10; doi:10.1093/nass/nrl005 [Abstract] [PDF] [Request Permissions]  

Yoshinobu Shiba, Hidetoshi Kitagawa, Yutaka Masutomi, Kouichi Ishiyama, Tadaaki Ohgi, and Junichi Yano
A novel RNA synthetic method with a 2'-O-(2-cyanoethoxymethyl) protecting group
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 11-12; doi:10.1093/nass/nrl006 [Abstract] [PDF] [Request Permissions]  

Yasunori Mitsuoka, Ryo Ohnishi, Yoshiyuki Hari, Satoshi Obika, and Takeshi Imanishi
Synthesis of 2',4'-BNACOC bearing a purine nucleobase
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 13-14; doi:10.1093/nass/nrl007 [Abstract] [PDF] [Request Permissions]  

Eric T. Kool, Haige Lu, Su Jeong Kim, Samuel Tan, James N. Wilson, Jianmin Gao, and Haibo Liu
New designs for DNA bases: Expanded DNAs and oligofluorosides
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 15-16; doi:10.1093/nass/nrl008 [Abstract] [PDF] [Request Permissions]  

Kenji Kuroda, Hidehiko Kodama, Masanori Kataoka, and Yoshihiro Hayakawa
A ribonucleoside with pyrimido[4,5-d]pyrimidine-2,4,5,7-(1H,3H,6H,8H)-tetraone as a nucleobase, which universally binds to natural nucleosides
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 17-18; doi:10.1093/nass/nrl009 [Abstract] [PDF] [Request Permissions]  

Masahiro Mizuta, Kenichi Miyata, Kohji Seio, Tomofumi Santa, and Mitsuo Sekine
Synthesis of fluorescent cyclic cytosine nucleosides and their fluorescent properties upon incorporation into oligonucleotides
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 19-20; doi:10.1093/nass/nrl010 [Abstract] [PDF] [Request Permissions]  

Osamu Nakagawa, Sayaka Ono, Akira Tsujimoto, Zhichun Li, and Shigeki Sasaki
Fluorescence detection of 8-oxoguanosine by G-clamp derivatives
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 21-22; doi:10.1093/nass/nrl011 [Abstract] [PDF] [Request Permissions]  

Kumiko Sugiyama and Akira Ono
Preparation of diverse metal binding sites along the helical structure of duplex DNA
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 23-24; doi:10.1093/nass/nrl012 [Abstract] [PDF] [Request Permissions]  

Hiroshi Abe, Naoko Abe, and Yoshihiro Ito
Structure analysis of oligonucleotide in organic solvent
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 25-26; doi:10.1093/nass/nrl013 [Abstract] [PDF] [Request Permissions]  

Kaoru Takada, Sung Won Choi, Asako Yamayoshi, Arihiro Kano, and Atsushi Maruyama
Structural effect of cationic copolymers on nucleic acid-chaperoning activity
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 27-28; doi:10.1093/nass/nrl014 [Abstract] [PDF] [Request Permissions]  

Ayato Sato, Yoshinori Kawazoe, Shinji Kamisuki, and Motonari Uesugi
Synthesis of synthetic small molecule transcription factors (STF)
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 29-30; doi:10.1093/nass/nrl015 [Abstract] [PDF] [Request Permissions]  

Masayasu Kuwahara, Yoshiyuki Suto, Satoshi Minezaki, Rina Kitagata, Jun-ichi Nagashima, and Hiroaki Sawai
Substrate property and incorporation accuracy of various dATP analogs during enzymatic polymerization using thermostable DNA polymerases
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 31-32; doi:10.1093/nass/nrl016 [Abstract] [PDF] [Request Permissions]  

Ichiro Hirao, Michiko Kimoto, Tsuneo Mitsui, Tsuyoshi Fujiwara, Rie Kawai, Akira Sato, Yoko Harada, and Shigeyuki Yokoyama
An unnatural base pair system for in vitro replication and transcription
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 33-34; doi:10.1093/nass/nrl017 [Abstract] [PDF] [Request Permissions]  

Hiroshi Murakami, Atushi Ohta, Yuki Goto, Yusuke Sako, and Hiroaki Suga
Flexizyme as a versatile tRNA acylation catalyst and the application for translation
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 35-36; doi:10.1093/nass/nrl018 [Abstract] [PDF] [Request Permissions]  

Shinsuke Sando, Kenji Abe, Nobuhiko Sato, Toshihiro Shibata, Keigo Mizusawa, and Yasuhiro Aoyama
Efforts toward codon table engineering: Expansion of unnatural substrates acceptable by the E. coli ribosome
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 37-38; doi:10.1093/nass/nrl019 [Abstract] [PDF] [Request Permissions]  

Yoshiteru. Sato, Kenta Mitomi, Hiromu Sugiyama, Satoru Shimizu, Ella C. M. Juan, Jiro Kondo, and Akio Takénaka
Multiplex formation of repetitive sequences d([G]nA)m through non-WC pairings: Crystal structure of d(gcGAGGGAgc)
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 39-40; doi:10.1093/nass/nrl020 [Abstract] [PDF] [Request Permissions]  

Hirofumi Ohishi, Toshimasa Ishida, Koji Tsukamoto, Naoyoshi Maezaki, and Tetsuaki Tanaka
A crystal structure study when crystallized only in d(CG)3 + methylamine and a d(CG)3 + metal ion
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 41-42; doi:10.1093/nass/nrl021 [Abstract] [PDF] [Request Permissions]  

Mayumi Amano
NMR studies of the effect of GA-AG base pairs to the active conformation of hammerhead ribozyme
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 43-44; doi:10.1093/nass/nrl022 [Abstract] [PDF] [Request Permissions]  

Akimasa Matsugami, Hiroaki Tsuchibayashi, Yan Xu, Yuuki Noguchi, Hiroshi Sugiyama, and Masato Katahira
The new models of the human telomere DNA in K+ solution revealed by NMR analysis assisted by the incorporation of 8-bromoguanines
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 45-46; doi:10.1093/nass/nrl023 [Abstract] [PDF] [Request Permissions]  

Yoshiyuki Tanaka, Shuji Oda, Hiroshi Yamaguchi, Megumi Kudo, Yoshinori Kondo, Chojiro Kojima, and Akira Ono
Structural analyses on the mercuryII-mediated T-T base pair
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 47-48; doi:10.1093/nass/nrl024 [Abstract] [PDF] [Request Permissions]  

Shuntaro Takahashi, Ryoko Akita, Hiroyuki Furusawa, Yoshihiro Shimizu, Takuya Ueda, and Yoshio Okahata
Kinetic analysis of ribosome binding process onto mRNA using a quartz-crystal microbalance
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 49-50; doi:10.1093/nass/nrl025 [Abstract] [PDF] [Request Permissions]  

Kazimierz Grzeskowiak
Strategies for crystallization of protein/DNA bound complex by in situ phosphorylation of aspartic residue using 5'-phosphorylated-DNA
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 51-52; doi:10.1093/nass/nrl026 [Abstract] [PDF] [Request Permissions]  

Chrystel Lopin, Goulnara Garipova, Irina Kalinina, Pierre Raboisson, Tomohisa Osaki, Arnaud Gautier, Sébastien Balieu, Carmen Salcedo, Géraldine Gouhier, and Serge R. Piettre
Nucleotides and nucleic acids: A source of inspiration for the development of new, phosphorus-centered functional groups
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 53-54; doi:10.1093/nass/nrl027 [Abstract] [PDF] [Request Permissions]  

Christian J. Leumann
Sugar modification as a means to increase the biological performance of oligonucleotides
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 55-56; doi:10.1093/nass/nrl167 [Abstract] [PDF] [Request Permissions]  

Haruhiko Taguchi, Akihiro Ohkubo, Kohji Seio, and Mitsuo Sekine
Synthesis of deoxycytidine derivatives and their use for the selective photo crosslinking with 5-methylcytosine
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 57-58; doi:10.1093/nass/nrl028 [Abstract] [PDF] [Request Permissions]  

Akio Kobori, Takashi Kobuchi, Masato Ikeda, and Akira Murakami
Synthesis and cross-linking activities of oligodeoxynucleotides containing a 4-oxoalkenal group
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 59-60; doi:10.1093/nass/nrl029 [Abstract] [PDF] [Request Permissions]  

Junpei Yamamoto, Kenichi Hitomi, Takeshi Todo, and Shigenori Iwai
Synthesis of oligonucleotides containing the Dewar valence isomer of the (6–4) photoproduct and their application to (6–4) photolyase studies
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 61-62; doi:10.1093/nass/nrl030 [Abstract] [PDF] [Request Permissions]  

Shunpei Murata, Yoko Mizumura, Satoshi Ichikawa, and Akira Matsuda
Design, synthesis and structural analysis of novel bent DNAs containing cyclic uridylate dimer analogues
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 63-64; doi:10.1093/nass/nrl031 [Abstract] [PDF] [Request Permissions]  

Akiko Noma and Tsutomu Suzuki
Ribonucleome analysis identified enzyme genes responsible for wybutosine synthesis
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 65-66; doi:10.1093/nass/nrl032 [Abstract] [PDF] [Request Permissions]  

Mariusz Popenda, Lukasz Bielecki, and Ryszard W. Adamiak
High-throughput method for the prediction of low-resolution, three-dimensional RNA structures
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 67-68; doi:10.1093/nass/nrl033 [Abstract] [PDF] [Request Permissions]  

Hikoya Hayatsu, Katsumi Tsuji, and Kazuo Negishi
Does urea promote the bisulfite-mediated deamination of cytosine in DNA? Investigation aiming at speeding-up the procedure for DNA methylation analysis
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 69-70; doi:10.1093/nass/nrl034 [Abstract] [PDF] [Request Permissions]  

Kazuhiro Hara, Masaya Kitamura, and Hideo Inoue
Synthesis and ribonuclease activity of oligonucleotides with N3-terpyridine•Cu(II)-linked thymine residues
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 71-72; doi:10.1093/nass/nrl035 [Abstract] [PDF] [Request Permissions]  

Aya Shibata, Yoshihito Ueno, Akira Matsuda, and Yukio Kitade
Synthesis and properties of double-stranded antisense oligonucleotides connected with a pentaerythritol linker
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 73-74; doi:10.1093/nass/nrl036 [Abstract] [PDF] [Request Permissions]  

Takehiko Wada, Yoshiki Maeda, Nobuya Sawa, Hirofumi Sato, Shiroh Futaki, and Yoshihisa Inoue
RNA recognition and recognition control of {alpha}-peptide ribonucleic acids containing arginine residue by external factors
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 75-76; doi:10.1093/nass/nrl037 [Abstract] [PDF] [Request Permissions]  

Akiko Yano, Mayumi Kunimoto, Takako Minami, and Kazuo Harada
Identification of antisense RNA stem-loops that inhibit RNA-protein interactions using a bacterial reporter system
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 77-78; doi:10.1093/nass/nrl038 [Abstract] [PDF] [Request Permissions]  

Masaaki Hayafune, Naoko Miyano-Kurosaki, Akiko Kusunoki, Yuka Mouri, and Hiroshi Takaku
HIV gene therapy using RNA virus systems
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 79-80; doi:10.1093/nass/nrl039 [Abstract] [PDF] [Request Permissions]  

Hisae Karimata, Shu-ichi Nakano, and Naoki Sugimoto
The roles of cosolutes on the hammerhead ribozyme activity
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 81-82; doi:10.1093/nass/nrl040 [Abstract] [PDF] [Request Permissions]  

Kazuhito Tanabe, Hiroshi Kanezaki, Nao Hirata, Mitsuru Goto, and Sei-ichi Nishimoto
Regulation of DNA duplex formation by hypoxic irradiation: one-electron reduction characteristics of oligodeoxynucleotides possessing 2-oxoalkyl functional group
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 83-84; doi:10.1093/nass/nrl041 [Abstract] [PDF] [Request Permissions]  

Hidenori Nishioka, Hiromu Kashida, Makoto Komiyama, Xingguo Liang, and Hiroyuki Asanuma
Incorporation of methyl group on azobenzene for the effective photo-regulation of hybridization and suppression of thermal isomerization
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 85-86; doi:10.1093/nass/nrl042 [Abstract] [PDF] [Request Permissions]  

Chikara Dohno, Shin-nosuke Uno, and Kazuhiko Nakatani
Control of DNA hybridization by photoswitchable mismatch binding ligands
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 87-88; doi:10.1093/nass/nrl043 [Abstract] [PDF] [Request Permissions]  

Hidetaka Torigoe, Tetsuo Kozasa, and Akira Ono
Detection of C:C mismatch base pair by fluorescence spectral change upon addition of silver (I) cation: Toward the efficient analyses of single nucleotide polymorphism
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 89-90; doi:10.1093/nass/nrl044 [Abstract] [PDF] [Request Permissions]  

Kotaro Morita, Seiichi Nishizawa, and Norio Teramae
Use of abasic site-containing DNA for electrochemical SNPs detection
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 91-92; doi:10.1093/nass/nrl045 [Abstract] [PDF] [Request Permissions]  

Satoshi Kumamoto, Atsushi Maruyama, Mitsunobu Nakamura, and Kazushige Yamana
Electrochemical detection of DNA single base mismatch by the use of strand exchange reaction
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 93-94; doi:10.1093/nass/nrl046 [Abstract] [PDF] [Request Permissions]  

Xingguo Liang, Benjamin Chun-Yeung Li, Kari Jensen, and Maxim D. Frank-Kamenetskii
Ab initio DNA synthesis accelerated by endonuclease
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 95-96; doi:10.1093/nass/nrl047 [Abstract] [PDF] [Request Permissions]  

Seung Pil Pack, Akihiro Doi, Mitsuru Nonogawa, Nagendra Kumar Kamisetty, Kamakshaiah Charyulu Devarayapalli, Tsutomu Kodaki, and Keisuke Makino
Structural property and enzymatic response of oxanine in DNA strands
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 97-98; doi:10.1093/nass/nrl048 [Abstract] [PDF] [Request Permissions]  

Hiroyuki Kamiya, Akihiro Suzuki, Kazuaki Kawai, Hiroshi Kasai, and Hideyoshi Harashima
Mutagenic properties of oxidized GTP and ATP in in vitro transcription-reverse transcription
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 99-100; doi:10.1093/nass/nrl049 [Abstract] [PDF] [Request Permissions]  

Akira Sato, Eriko Miyazaki, Akito Satake, Akiko Hiramoto, Osamu Hiraoka, Tsuyoshi Miyake, Hye-Sook Kim, and Yusuke Wataya
Proteome and transcriptome analysis of 5-fluoro-2'-deoxyuridine-induced cell death mechanisms
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 101-102; doi:10.1093/nass/nrl050 [Abstract] [PDF] [Request Permissions]  

Tomoharu Naito, Tatsushi Yokogawa, Hye-Sook Kim, Akira Matsuda, Takuma Sasaki, Masakazu Fukushima, Yukio Kitade, and Yusuke Wataya
An apoptotic pathway of 3'-Ethynylcytidine(ECyd) involving the inhibition of RNA synthesis mediated by RNase L
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 103-104; doi:10.1093/nass/nrl051 [Abstract] [PDF] [Request Permissions]  

Yusuke Kitamura, Toshihiro Ihara, Yusuke Tsujimura, Yuka Osawa, and Akinori Jyo
Colorimetric allele analysis based on the DNA-directed cooperative formation of luminous lanthanide complexes
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 105-106; doi:10.1093/nass/nrl052 [Abstract] [PDF] [Request Permissions]  

Shinobu Sato, Hiroki Kondo, and Shigeori Takenaka
Linker chain effect of ferrocenylnaphthalene diimide derivatives on a tetraplex DNA binding
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 107-108; doi:10.1093/nass/nrl053 [Abstract] [PDF] [Request Permissions]  

Yoji Yamamoto, Junya Yoshida, Tullia Tedeschi, Roberto Corradini, Stefano Sforza, and Makoto Komiyama
Highly efficient strand invasion by peptide nucleic acid bearing optically pure lysine residues in its backbone
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 109-110; doi:10.1093/nass/nrl054 [Abstract] [PDF] [Request Permissions]  

Shunta Sasaki, Masafumi Minoshima, Tatsuhiko Shimizu, Jun Fujimoto, Ken-ichi Shinohara, Toshikazu Bando, and Hiroshi Sugiyama
The biological impact of sequence-specific DNA alkylation by pyrrole-imidazole polyamides
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 111-112; doi:10.1093/nass/nrl055 [Abstract] [PDF] [Request Permissions]  

Masahiro Ikejiri, Masayuki Saijo, Shigeru Morikawa, Shuetsu Fukushi, Tetsuya Mizutani, Ichiro Kurane, and Tokumi Maruyama
Anti-SARS-CoV activity of nucleoside analogs having 6-chloropurine as a nucleobase
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 113-114; doi:10.1093/nass/nrl056 [Abstract] [PDF] [Request Permissions]  

Kazuhiro Haraguchi, Hisashi Shimada, and Hiromichi Tanaka
Nucleophilic substitution of 4'-acetoxy-4'-thionucleosides: A new access to 4'-substituted 4'-thiothymidines
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 115-116; doi:10.1093/nass/nrl057 [Abstract] [PDF] [Request Permissions]  

Hiroki Kumamoto, Nonoko Takahashi, Tomomi Shimamura, and Hiromichi Tanaka
Synthesis of novel 4'-carbon-substituted BCA derivatives based on radical cyclization
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 117-118; doi:10.1093/nass/nrl058 [Abstract] [PDF] [Request Permissions]  

Natsumi Sakaguchi, Takashi Kudoh, Takashi Murayama, Mitsuhiro Arisawa, Akira Matsuda, and Satoshi Shuto
Synthesis of 5''-substituted cyclic ADP-carbocyclic-ribose as biological tools
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 119-120; doi:10.1093/nass/nrl059 [Abstract] [PDF] [Request Permissions]  

Ryuya Tawarada, Kohji Seio, and Mitsuo Sekine
Synthesis and properties of artificial base pairs by use of halogen bonds
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 121-122; doi:10.1093/nass/nrl060 [Abstract] [PDF] [Request Permissions]  

Natsuhisa Oka, Mika Yamamoto, Terutoshi Sato, and Takeshi Wada
Solid-phase synthesis of stereoregulated oligodeoxyribonucleoside phosphorothioates
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 123-124; doi:10.1093/nass/nrl061 [Abstract] [PDF] [Request Permissions]  

Masayuki Ogino, Daisuke Okamura, Yoshinaga Yoshimura, and Kenzo Fujimoto
Nucleotide insertion opposite a cyclobutane pyrimidine dimer analogue caused from photoligation by a replicative DNA polymerase
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 125-126; doi:10.1093/nass/nrl062 [Abstract] [PDF] [Request Permissions]  

Kazuo Tanaka, Taku Kamei, and Akimitsu Okamoto
Evaluation of novel one-electron reduction with metal in DNA
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 127-128; doi:10.1093/nass/nrl063 [Abstract] [PDF] [Request Permissions]  

Kazuki Tainaka, Kazuo Tanaka, and Akimitsu Okamoto
Development of bipyridine-modified nucleobase for methylcytosine-selective crosslink reaction
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 129-130; doi:10.1093/nass/nrl064 [Abstract] [PDF] [Request Permissions]  

Kazuki Tainaka, Shuji Ikeda, Kazuo Tanaka, Ken-ichiro Nishiza, Tomo Unzai, Akimitsu Okamoto, and Isao Saito
Synthesis and properties of novel PRODAN-labeled uridine
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 131-132; doi:10.1093/nass/nrl065 [Abstract] [PDF] [Request Permissions]  

Kazuki Tainaka, Shuji Ikeda, Kazuo Tanaka, Ken-ichiro Nishiza, Yoshimasa Fujiwara, Akimitsu Okamoto, and Isao Saito
Development of novel PRODAN-labeled nucleosides as base-discriminating fluorescent probes
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 133-134; doi:10.1093/nass/nrl066 [Abstract] [PDF] [Request Permissions]  

Kazuo Tanaka, Kazuki Tainaka, Taku Kamei, and Akimitsu Okamoto
Development of fluorescence-labeling method for methylcytosine with metal complexation
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 135-136; doi:10.1093/nass/nrl067 [Abstract] [PDF] [Request Permissions]  

Kazuo Tanaka, Kazuki Tainaka, Shohei Fujishima, and Akimitsu Okamoto
Photochemical evaluation of dual fluorescence of a novel DNA groove binder
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 137-138; doi:10.1093/nass/nrl068 [Abstract] [PDF] [Request Permissions]  

Kazuo Tanaka, Kazuki Tainaka, and Akimitsu Okamoto
Fluorescence quenching by methylcytosine-metal complexation
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 139-140; doi:10.1093/nass/nrl069 [Abstract] [PDF] [Request Permissions]  

Kazuo Tanaka, Kazuki Tainaka, Taku Kamei, and Akimitsu Okamoto
Development of electrochemical detection for methylcytosine and its application
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 141-142; doi:10.1093/nass/nrl070 [Abstract] [PDF] [Request Permissions]  

Shizuka Nakayama, Fumi Nagatsugi, and Shigeki Sasaki
Novel drug releasing system triggered by hybridization with target sequence
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 143-144; doi:10.1093/nass/nrl071 [Abstract] [PDF] [Request Permissions]  

Tomoya Hasegawa, Atsusi Shoji, Masayasu Kuwahara, Hiroaki Ozaki, and Hiroaki Sawai
Synthesis and property of DNA labeled with fluorescent acridone
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 145-146; doi:10.1093/nass/nrl072 [Abstract] [PDF] [Request Permissions]  

Masaki Hagihara and Kazuhiko Nakatani
Inhibition of DNA replication by a d(CAG) repeat binding ligand
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 147-148; doi:10.1093/nass/nrl073 [Abstract] [PDF] [Request Permissions]  

Ryu Tashiro, Andrew H.-J. Wang, and Hiroshi Sugiyama
Detection of photoinduced electron transfer from Sso7d to DNA
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 149-150; doi:10.1093/nass/nrl074 [Abstract] [PDF] [Request Permissions]  

Yoshinaga Yoshimura and Kenzo Fujimoto
Photoinduced repair of a thymine dimer in DNA via carbazole nucleoside
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 151-152; doi:10.1093/nass/nrl075 [Abstract] [PDF] [Request Permissions]  

Shintaro Ogata, Kazuyuki Kuramoto, Naonori Inoue, Noriaki Minakawa, and Akira Matsuda
Hybridization properties and enzymatic recognitions of Naphthyridine:Imidazopyridopyrimidine base pairs
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 153-154; doi:10.1093/nass/nrl076 [Abstract] [PDF] [Request Permissions]  

Tatsuhiko Shimizu, Shunta Sasaki, Masafumi Minoshima, Ken-ichi Shinohara, Toshikazu Bando, and Hiroshi Sugiyama
Synthesis and evaluation of sequence-specific DNA alkylating agents: Effect of alkylation subunits
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 155-156; doi:10.1093/nass/nrl077 [Abstract] [PDF] [Request Permissions]  

Toru Sugiyama, Yasutada Imamura, Wataru Hakamata, Masaaki Kurihara, and Atsushi Kittaka
Sequence-specific recognition of double-stranded DNA by cooperative strand invasion
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 157-158; doi:10.1093/nass/nrl078 [Abstract] [PDF] [Request Permissions]  

Naoki Iwamoto, Terutoshi Sato, Natsuhisa Oka, and Takeshi Wada
Stereocontrolled synthesis of H-phosphonate DNA
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 159-160; doi:10.1093/nass/nrl079 [Abstract] [PDF] [Request Permissions]  

Tomonobu Kataoka, Mikimasa Tanada, Ippei Onishi, and Shigeki Sasaki
Recognition of DNA with assembly of minor groove binders mediated by metal complexation
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 161-162; doi:10.1093/nass/nrl080 [Abstract] [PDF] [Request Permissions]  

Hisatsugu Yamada, Kazuhito Tanabe, and Sei-ichi Nishimoto
Sensitive discrimination between cytosine and 5-methylcytosine in DNA by a modified invader method
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 163-164; doi:10.1093/nass/nrl081 [Abstract] [PDF] [Request Permissions]  

Masafumi Minoshima, Shunta Sasaki, Ken-ichi Shinohara, Tatsuhiko Shimizu, Toshikazu Bando, and Hiroshi Sugiyama
Molecular design of DNA alkylating pyrrole-imidazole polyamides with longer recognition sequence
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 165-166; doi:10.1093/nass/nrl082 [Abstract] [PDF] [Request Permissions]  

Hiroyuki Hayashi, Xingguo Liang, Jing Zhao, Makoto Komiyama, and Hiroyuki Asanuma
Activation of DNA enzyme 10–23 by tethering an intercalator to its backbone
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 167-168; doi:10.1093/nass/nrl083 [Abstract] [PDF] [Request Permissions]  

Kazuteru Usui, Mariko Aso, Yukiko Toguchi, Yoshie Kakihara, Tsuyoshi Goromaru, and Hiroshi Suemune
Photochemical generation of C4'-oxidized abasic site containing oligonucleotide and its amine modification reaction
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 169-170; doi:10.1093/nass/nrl084 [Abstract] [PDF] [Request Permissions]  

Nagendra Kumar Kamisetty, Seung Pil Pack, Mitsuru Nonogawa, Kamakshaiah Charyulu Devarayapalli, Tsutomu Kodaki, and Keisuke Makino
Synthesis and application of new amine-modified oligonucleotides using H-phosphonate chemistry
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 171-172; doi:10.1093/nass/nrl085 [Abstract] [PDF] [Request Permissions]  

Shinzi Ogasawara and Kenzo Fujimoto
High selectivity detection of point mutation by DNA photochemical cross-linking
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 173-174; doi:10.1093/nass/nrl086 [Abstract] [PDF] [Request Permissions]  

Reiko Iwase, Hideo Miyao, Takaaki Toyama, and Kengo Nishimori
Synthesis and properties of modified siRNA having amide-linked oligoribonucleosides at their 3' overhang regions
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 175-176; doi:10.1093/nass/nrl087 [Abstract] [PDF] [Request Permissions]  

Tetsuya Kumashiro, Toru Otake, Takuya Kawahata, Masao Akagi, and Hidehito Urata
Synthesis and properties of G-quartet oligonucleotide-HIV-1 tat peptide conjugate
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 177-178; doi:10.1093/nass/nrl088 [Abstract] [PDF] [Request Permissions]  

Subhendu Sekhar Bag, Yoshio Saito, Kazuo Hanawa, Keigo Hayasi, Satoshi Kodate, Isamu Suzuka, and Isao Saito
Synthesis of perylene-labeled base-discriminating fluorescent (BDF) nucleoside and its fluorescence properties
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 179-180; doi:10.1093/nass/nrl089 [Abstract] [PDF] [Request Permissions]  

Yoshio Saito, Kazuo Hanawa, Subhendu Sekhar Bag, Kaori Motegi, and Isao Saito
Synthesis and properties of acridone-labeled base-discriminating fluorescent (BDF) nucleosides
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 181-182; doi:10.1093/nass/nrl090 [Abstract] [PDF] [Request Permissions]  

Yan Xu, Shinya Yamazaki, Hideji Osuga, and Hiroshi Sugiyama
The recognition of higher-order G–quadruplex by chiral cyclic-helicene molecules
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 183-184; doi:10.1093/nass/nrl091 [Abstract] [PDF] [Request Permissions]  

Eriko Aoki, Yosuke Taniguchi, Mieko Togo, and Shigeki Sasaki
Effects of the modified aromatic ring of WNA on stability of triplex DNA
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 185-186; doi:10.1093/nass/nrl092 [Abstract] [PDF] [Request Permissions]  

Tomohisa Moriguchi, Tomoyuki Ohike, and Kazuo Shinozuka
Development of DNA-intercalator-polyamine multi-conjugate bearing the ability of the sequence-specific RNA hydrolysis
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 187-188; doi:10.1093/nass/nrl093 [Abstract] [PDF] [Request Permissions]  

Hirosuke Tsunoda, Akihiro Ohkubo, Haruhiko Taguchi, Kohji Seio, and Mitsuo Sekine
Synthesis and properties of DNA oligomers containing 2'-deoxycytidine-N-oxide
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 189-190; doi:10.1093/nass/nrl094 [Abstract] [PDF] [Request Permissions]  

Hajime Mita, Yoshitake Kato, Makie Ozawa, Toshinori Fujisaki, and Yasuhiko Yamamoto
Effects of various cations on the dynamic and thermodynamics of the dimerization of G-quadruplex DNA
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 191-192; doi:10.1093/nass/nrl095 [Abstract] [PDF] [Request Permissions]  

Hidekatsu Maeda, Shinya Wada, and Norihiko Minoura
Self-cleavage of DNA in the presence of metal ions
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 193-194; doi:10.1093/nass/nrl096 [Abstract] [PDF] [Request Permissions]  

S. M. Abdur Rahman, Sayori Seki, Kazushige Utsuki, Satoshi Obika, Kazuyuki Miyashita, and Takeshi Imanishi
High-affinity RNA mimicking binding of 2',4'-BNANC towards complementary strands: A comparative study with 2',4'-BNA/LNA
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 195-196; doi:10.1093/nass/nrl097 [Abstract] [PDF] [Request Permissions]  

Li-Ping Bai, Zhong-Zhen Zhao, Zongwei Cai, and Zhi-Hong Jiang
Site-specific binding of chelerythrine to single cytosine and thymine bulges in DNA hairpins
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 197-198; doi:10.1093/nass/nrl098 [Abstract] [PDF] [Request Permissions]  

Shuji Oda, Tomoyuki Komuro, Yoshinori Kondo, Akira Ono, and Yoshiyuki Tanaka
Spectroscopic analysis of AgI-DNA complex
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 199-200; doi:10.1093/nass/nrl099 [Abstract] [PDF] [Request Permissions]  

Shu-ichi Nakano, Yuuki Uotani, Yuichi Sato, Hirohito Oka, Kazuya Uenishi, Masayuki Fujii, and Naoki Sugimoto
Recognition of the base pair-mimic nucleosides by DNA polymerases
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 201-202; doi:10.1093/nass/nrl100 [Abstract] [PDF] [Request Permissions]  

Daisuke Miyoshi, Hisae Karimata, and Naoki Sugimoto
Factors regulating thermodynamic stability of DNA structures under molecular crowding conditions
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 203-204; doi:10.1093/nass/nrl101 [Abstract] [PDF] [Request Permissions]  

Xiao-Bo Gu, Shu-ichi Nakano, and Naoki Sugimoto
The effect of the structure of cosolutes on the DNA duplex formation
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 205-206; doi:10.1093/nass/nrl102 [Abstract] [PDF] [Request Permissions]  

Hai-Qing Yu, Daisuke Miyoshi, and Naoki Sugimoto
Properties of long human telomeric DNAs under cell-mimicking conditions
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 207-208; doi:10.1093/nass/nrl103 [Abstract] [PDF] [Request Permissions]  

Kamakshaiah Charyulu Devarayapalli, Seung Pil Pack, Nagendra Kumar Kamisetty, Mitsuru Nonogawa, Tsutomu Kodaki, and Keisuke Makino
Development of DNA-arrayed column for sensitive and selective analysis of DNA
NUCLEIC ACIDS SYMP SER (OXF) 2006 50: 209-210; doi:10.1093/nass/nrl104 [Abstract] [PDF] [Request Permissions]